Experiment: Fraxetin 2 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15725 and PS417_15730 are separated by 2 nucleotides PS417_15730 and PS417_15735 are separated by 307 nucleotides
PS417_15725: PS417_15725 - nitrate/nitrite transporter NarK, at 3,447,917 to 3,449,314
_15725
PS417_15730: PS417_15730 - major facilitator transporter, at 3,449,317 to 3,450,567
_15730
PS417_15735: PS417_15735 - histidine kinase, at 3,450,875 to 3,452,677
_15735
Position (kb)
3449
3450
3451 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3448.534 kb on - strand, within PS417_15725 at 3448.534 kb on - strand, within PS417_15725 at 3448.534 kb on - strand, within PS417_15725 at 3449.046 kb on + strand, within PS417_15725 at 3449.046 kb on + strand, within PS417_15725 at 3449.047 kb on - strand, within PS417_15725 at 3449.375 kb on + strand at 3449.408 kb on + strand at 3449.555 kb on + strand, within PS417_15730 at 3449.555 kb on + strand, within PS417_15730 at 3449.867 kb on + strand at 3449.868 kb on - strand, within PS417_15730 at 3449.868 kb on - strand, within PS417_15730 at 3449.870 kb on + strand, within PS417_15730 at 3449.870 kb on + strand, within PS417_15730 at 3449.871 kb on - strand, within PS417_15730 at 3449.871 kb on - strand, within PS417_15730 at 3449.900 kb on + strand, within PS417_15730 at 3449.900 kb on + strand, within PS417_15730 at 3449.921 kb on + strand, within PS417_15730 at 3450.275 kb on + strand, within PS417_15730 at 3450.275 kb on + strand, within PS417_15730 at 3450.287 kb on + strand, within PS417_15730 at 3450.299 kb on + strand, within PS417_15730 at 3450.725 kb on - strand at 3450.791 kb on + strand at 3450.791 kb on + strand at 3450.792 kb on - strand at 3451.041 kb on - strand at 3451.041 kb on - strand at 3451.041 kb on - strand at 3451.397 kb on + strand, within PS417_15735 at 3451.397 kb on + strand, within PS417_15735
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 2 mM; liquid stress remove 3,448,534 - PS417_15725 0.44 +1.1 3,448,534 - PS417_15725 0.44 -1.5 3,448,534 - PS417_15725 0.44 -0.4 3,449,046 + PS417_15725 0.81 +0.2 3,449,046 + PS417_15725 0.81 +1.2 3,449,047 - PS417_15725 0.81 -0.3 3,449,375 + -0.2 3,449,408 + -2.2 3,449,555 + PS417_15730 0.19 -0.5 3,449,555 + PS417_15730 0.19 -0.3 3,449,867 + +2.2 3,449,868 - PS417_15730 0.44 +0.5 3,449,868 - PS417_15730 0.44 -0.9 3,449,870 + PS417_15730 0.44 -0.6 3,449,870 + PS417_15730 0.44 -0.8 3,449,871 - PS417_15730 0.44 -0.8 3,449,871 - PS417_15730 0.44 +0.5 3,449,900 + PS417_15730 0.47 -1.5 3,449,900 + PS417_15730 0.47 -0.7 3,449,921 + PS417_15730 0.48 -0.4 3,450,275 + PS417_15730 0.77 +0.2 3,450,275 + PS417_15730 0.77 -0.4 3,450,287 + PS417_15730 0.78 -0.7 3,450,299 + PS417_15730 0.78 -0.6 3,450,725 - -1.4 3,450,791 + +0.0 3,450,791 + -0.0 3,450,792 - -0.1 3,451,041 - -0.6 3,451,041 - +0.4 3,451,041 - -0.9 3,451,397 + PS417_15735 0.29 -0.9 3,451,397 + PS417_15735 0.29 +1.7
Or see this region's nucleotide sequence