Strain Fitness in Pseudomonas simiae WCS417 around PS417_15730

Experiment: Fraxetin 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15725 and PS417_15730 are separated by 2 nucleotidesPS417_15730 and PS417_15735 are separated by 307 nucleotides PS417_15725: PS417_15725 - nitrate/nitrite transporter NarK, at 3,447,917 to 3,449,314 _15725 PS417_15730: PS417_15730 - major facilitator transporter, at 3,449,317 to 3,450,567 _15730 PS417_15735: PS417_15735 - histidine kinase, at 3,450,875 to 3,452,677 _15735 Position (kb) 3449 3450 3451Strain fitness (log2 ratio) -2 -1 0 1 2at 3448.534 kb on - strand, within PS417_15725at 3448.534 kb on - strand, within PS417_15725at 3448.534 kb on - strand, within PS417_15725at 3449.046 kb on + strand, within PS417_15725at 3449.046 kb on + strand, within PS417_15725at 3449.047 kb on - strand, within PS417_15725at 3449.375 kb on + strandat 3449.408 kb on + strandat 3449.555 kb on + strand, within PS417_15730at 3449.555 kb on + strand, within PS417_15730at 3449.867 kb on + strandat 3449.868 kb on - strand, within PS417_15730at 3449.868 kb on - strand, within PS417_15730at 3449.870 kb on + strand, within PS417_15730at 3449.870 kb on + strand, within PS417_15730at 3449.871 kb on - strand, within PS417_15730at 3449.871 kb on - strand, within PS417_15730at 3449.900 kb on + strand, within PS417_15730at 3449.900 kb on + strand, within PS417_15730at 3449.921 kb on + strand, within PS417_15730at 3450.275 kb on + strand, within PS417_15730at 3450.275 kb on + strand, within PS417_15730at 3450.287 kb on + strand, within PS417_15730at 3450.299 kb on + strand, within PS417_15730at 3450.725 kb on - strandat 3450.791 kb on + strandat 3450.791 kb on + strandat 3450.792 kb on - strandat 3451.041 kb on - strandat 3451.041 kb on - strandat 3451.041 kb on - strandat 3451.397 kb on + strand, within PS417_15735at 3451.397 kb on + strand, within PS417_15735

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; liquid stress
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3,448,534 - PS417_15725 0.44 +1.1
3,448,534 - PS417_15725 0.44 -1.5
3,448,534 - PS417_15725 0.44 -0.4
3,449,046 + PS417_15725 0.81 +0.2
3,449,046 + PS417_15725 0.81 +1.2
3,449,047 - PS417_15725 0.81 -0.3
3,449,375 + -0.2
3,449,408 + -2.2
3,449,555 + PS417_15730 0.19 -0.5
3,449,555 + PS417_15730 0.19 -0.3
3,449,867 + +2.2
3,449,868 - PS417_15730 0.44 +0.5
3,449,868 - PS417_15730 0.44 -0.9
3,449,870 + PS417_15730 0.44 -0.6
3,449,870 + PS417_15730 0.44 -0.8
3,449,871 - PS417_15730 0.44 -0.8
3,449,871 - PS417_15730 0.44 +0.5
3,449,900 + PS417_15730 0.47 -1.5
3,449,900 + PS417_15730 0.47 -0.7
3,449,921 + PS417_15730 0.48 -0.4
3,450,275 + PS417_15730 0.77 +0.2
3,450,275 + PS417_15730 0.77 -0.4
3,450,287 + PS417_15730 0.78 -0.7
3,450,299 + PS417_15730 0.78 -0.6
3,450,725 - -1.4
3,450,791 + +0.0
3,450,791 + -0.0
3,450,792 - -0.1
3,451,041 - -0.6
3,451,041 - +0.4
3,451,041 - -0.9
3,451,397 + PS417_15735 0.29 -0.9
3,451,397 + PS417_15735 0.29 +1.7

Or see this region's nucleotide sequence