Strain Fitness in Pseudomonas simiae WCS417 around PS417_13495

Experiment: Fraxetin 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13485 and PS417_13490 are separated by 40 nucleotidesPS417_13490 and PS417_13495 are separated by 186 nucleotidesPS417_13495 and PS417_13500 overlap by 4 nucleotides PS417_13485: PS417_13485 - lipase, at 2,971,548 to 2,972,960 _13485 PS417_13490: PS417_13490 - hypothetical protein, at 2,973,001 to 2,973,225 _13490 PS417_13495: PS417_13495 - nuclease, at 2,973,412 to 2,975,058 _13495 PS417_13500: PS417_13500 - ATP-dependent DNA helicase, at 2,975,055 to 2,977,310 _13500 Position (kb) 2973 2974 2975 2976Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 2972.603 kb on + strand, within PS417_13485at 2972.651 kb on + strand, within PS417_13485at 2972.651 kb on + strand, within PS417_13485at 2972.831 kb on - strandat 2972.843 kb on - strandat 2972.994 kb on + strandat 2973.122 kb on + strand, within PS417_13490at 2973.123 kb on - strand, within PS417_13490at 2973.337 kb on + strandat 2973.337 kb on + strandat 2973.338 kb on - strandat 2973.342 kb on - strandat 2973.342 kb on - strandat 2973.342 kb on - strandat 2973.439 kb on + strandat 2973.439 kb on + strandat 2973.443 kb on - strandat 2973.443 kb on - strandat 2973.619 kb on + strand, within PS417_13495at 2973.619 kb on + strand, within PS417_13495at 2973.620 kb on - strand, within PS417_13495at 2973.693 kb on - strand, within PS417_13495at 2973.869 kb on - strand, within PS417_13495at 2973.970 kb on + strand, within PS417_13495at 2973.970 kb on + strand, within PS417_13495at 2973.970 kb on + strand, within PS417_13495at 2973.971 kb on - strand, within PS417_13495at 2974.122 kb on + strand, within PS417_13495at 2974.358 kb on + strand, within PS417_13495at 2974.738 kb on + strand, within PS417_13495at 2975.061 kb on + strandat 2975.062 kb on - strandat 2975.197 kb on - strandat 2975.216 kb on - strandat 2975.216 kb on - strandat 2975.302 kb on - strandat 2975.344 kb on + strand, within PS417_13500at 2975.344 kb on + strand, within PS417_13500at 2975.345 kb on - strand, within PS417_13500at 2975.345 kb on - strand, within PS417_13500at 2975.368 kb on - strand, within PS417_13500at 2975.424 kb on + strand, within PS417_13500at 2975.637 kb on + strandat 2975.706 kb on - strand, within PS417_13500at 2975.934 kb on + strand, within PS417_13500at 2975.935 kb on - strand, within PS417_13500

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; liquid stress
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2,972,603 + PS417_13485 0.75 -0.4
2,972,651 + PS417_13485 0.78 -3.0
2,972,651 + PS417_13485 0.78 -0.6
2,972,831 - +0.2
2,972,843 - -0.1
2,972,994 + +0.3
2,973,122 + PS417_13490 0.54 +0.4
2,973,123 - PS417_13490 0.54 -0.9
2,973,337 + -2.1
2,973,337 + -0.3
2,973,338 - -0.5
2,973,342 - -0.2
2,973,342 - +0.4
2,973,342 - +0.1
2,973,439 + -0.7
2,973,439 + -0.1
2,973,443 - -1.0
2,973,443 - +0.4
2,973,619 + PS417_13495 0.13 +1.3
2,973,619 + PS417_13495 0.13 -0.9
2,973,620 - PS417_13495 0.13 +5.8
2,973,693 - PS417_13495 0.17 -0.7
2,973,869 - PS417_13495 0.28 -0.4
2,973,970 + PS417_13495 0.34 -0.2
2,973,970 + PS417_13495 0.34 -0.1
2,973,970 + PS417_13495 0.34 -0.3
2,973,971 - PS417_13495 0.34 -0.0
2,974,122 + PS417_13495 0.43 -0.1
2,974,358 + PS417_13495 0.57 +1.8
2,974,738 + PS417_13495 0.81 -0.7
2,975,061 + -0.1
2,975,062 - -0.1
2,975,197 - +1.3
2,975,216 - -1.5
2,975,216 - +1.6
2,975,302 - +0.0
2,975,344 + PS417_13500 0.13 -0.1
2,975,344 + PS417_13500 0.13 +0.1
2,975,345 - PS417_13500 0.13 +0.1
2,975,345 - PS417_13500 0.13 +0.2
2,975,368 - PS417_13500 0.14 +1.1
2,975,424 + PS417_13500 0.16 +0.9
2,975,637 + +2.2
2,975,706 - PS417_13500 0.29 +0.0
2,975,934 + PS417_13500 0.39 -1.3
2,975,935 - PS417_13500 0.39 -0.3

Or see this region's nucleotide sequence