Experiment: Fraxetin 2 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13485 and PS417_13490 are separated by 40 nucleotides PS417_13490 and PS417_13495 are separated by 186 nucleotides PS417_13495 and PS417_13500 overlap by 4 nucleotides
PS417_13485: PS417_13485 - lipase, at 2,971,548 to 2,972,960
_13485
PS417_13490: PS417_13490 - hypothetical protein, at 2,973,001 to 2,973,225
_13490
PS417_13495: PS417_13495 - nuclease, at 2,973,412 to 2,975,058
_13495
PS417_13500: PS417_13500 - ATP-dependent DNA helicase, at 2,975,055 to 2,977,310
_13500
Position (kb)
2973
2974
2975
2976 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 2972.603 kb on + strand, within PS417_13485 at 2972.651 kb on + strand, within PS417_13485 at 2972.651 kb on + strand, within PS417_13485 at 2972.831 kb on - strand at 2972.843 kb on - strand at 2972.994 kb on + strand at 2973.122 kb on + strand, within PS417_13490 at 2973.123 kb on - strand, within PS417_13490 at 2973.337 kb on + strand at 2973.337 kb on + strand at 2973.338 kb on - strand at 2973.342 kb on - strand at 2973.342 kb on - strand at 2973.342 kb on - strand at 2973.439 kb on + strand at 2973.439 kb on + strand at 2973.443 kb on - strand at 2973.443 kb on - strand at 2973.619 kb on + strand, within PS417_13495 at 2973.619 kb on + strand, within PS417_13495 at 2973.620 kb on - strand, within PS417_13495 at 2973.693 kb on - strand, within PS417_13495 at 2973.869 kb on - strand, within PS417_13495 at 2973.970 kb on + strand, within PS417_13495 at 2973.970 kb on + strand, within PS417_13495 at 2973.970 kb on + strand, within PS417_13495 at 2973.971 kb on - strand, within PS417_13495 at 2974.122 kb on + strand, within PS417_13495 at 2974.358 kb on + strand, within PS417_13495 at 2974.738 kb on + strand, within PS417_13495 at 2975.061 kb on + strand at 2975.062 kb on - strand at 2975.197 kb on - strand at 2975.216 kb on - strand at 2975.216 kb on - strand at 2975.302 kb on - strand at 2975.344 kb on + strand, within PS417_13500 at 2975.344 kb on + strand, within PS417_13500 at 2975.345 kb on - strand, within PS417_13500 at 2975.345 kb on - strand, within PS417_13500 at 2975.368 kb on - strand, within PS417_13500 at 2975.424 kb on + strand, within PS417_13500 at 2975.637 kb on + strand at 2975.706 kb on - strand, within PS417_13500 at 2975.934 kb on + strand, within PS417_13500 at 2975.935 kb on - strand, within PS417_13500
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 2 mM; liquid stress remove 2,972,603 + PS417_13485 0.75 -0.4 2,972,651 + PS417_13485 0.78 -3.0 2,972,651 + PS417_13485 0.78 -0.6 2,972,831 - +0.2 2,972,843 - -0.1 2,972,994 + +0.3 2,973,122 + PS417_13490 0.54 +0.4 2,973,123 - PS417_13490 0.54 -0.9 2,973,337 + -2.1 2,973,337 + -0.3 2,973,338 - -0.5 2,973,342 - -0.2 2,973,342 - +0.4 2,973,342 - +0.1 2,973,439 + -0.7 2,973,439 + -0.1 2,973,443 - -1.0 2,973,443 - +0.4 2,973,619 + PS417_13495 0.13 +1.3 2,973,619 + PS417_13495 0.13 -0.9 2,973,620 - PS417_13495 0.13 +5.8 2,973,693 - PS417_13495 0.17 -0.7 2,973,869 - PS417_13495 0.28 -0.4 2,973,970 + PS417_13495 0.34 -0.2 2,973,970 + PS417_13495 0.34 -0.1 2,973,970 + PS417_13495 0.34 -0.3 2,973,971 - PS417_13495 0.34 -0.0 2,974,122 + PS417_13495 0.43 -0.1 2,974,358 + PS417_13495 0.57 +1.8 2,974,738 + PS417_13495 0.81 -0.7 2,975,061 + -0.1 2,975,062 - -0.1 2,975,197 - +1.3 2,975,216 - -1.5 2,975,216 - +1.6 2,975,302 - +0.0 2,975,344 + PS417_13500 0.13 -0.1 2,975,344 + PS417_13500 0.13 +0.1 2,975,345 - PS417_13500 0.13 +0.1 2,975,345 - PS417_13500 0.13 +0.2 2,975,368 - PS417_13500 0.14 +1.1 2,975,424 + PS417_13500 0.16 +0.9 2,975,637 + +2.2 2,975,706 - PS417_13500 0.29 +0.0 2,975,934 + PS417_13500 0.39 -1.3 2,975,935 - PS417_13500 0.39 -0.3
Or see this region's nucleotide sequence