Strain Fitness in Pseudomonas simiae WCS417 around PS417_25670

Experiment: Fraxetin 1 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25660 and PS417_25665 are separated by 136 nucleotidesPS417_25665 and PS417_25670 are separated by 24 nucleotidesPS417_25670 and PS417_25675 are separated by 70 nucleotides PS417_25660: PS417_25660 - N-acetyl-gamma-glutamyl-phosphate reductase, at 5,542,898 to 5,543,932 _25660 PS417_25665: PS417_25665 - membrane protein, at 5,544,069 to 5,544,497 _25665 PS417_25670: PS417_25670 - 2-nitropropane dioxygenase, at 5,544,522 to 5,545,484 _25670 PS417_25675: PS417_25675 - membrane protein, at 5,545,555 to 5,546,511 _25675 Position (kb) 5544 5545 5546Strain fitness (log2 ratio) -2 -1 0 1at 5543.796 kb on + strand, within PS417_25660at 5543.933 kb on - strandat 5543.973 kb on + strandat 5543.973 kb on + strandat 5544.012 kb on + strandat 5544.013 kb on - strandat 5544.031 kb on - strandat 5544.033 kb on + strandat 5544.033 kb on + strandat 5544.033 kb on + strandat 5544.033 kb on + strandat 5544.034 kb on - strandat 5544.034 kb on - strandat 5544.034 kb on - strandat 5544.034 kb on - strandat 5544.034 kb on - strandat 5544.064 kb on + strandat 5544.496 kb on - strandat 5544.496 kb on - strandat 5544.505 kb on + strandat 5544.825 kb on - strand, within PS417_25670at 5544.853 kb on + strand, within PS417_25670at 5544.854 kb on - strand, within PS417_25670at 5544.862 kb on + strand, within PS417_25670at 5545.111 kb on - strand, within PS417_25670at 5545.161 kb on + strand, within PS417_25670at 5545.357 kb on + strand, within PS417_25670at 5545.358 kb on - strand, within PS417_25670at 5545.426 kb on + strandat 5545.426 kb on + strandat 5545.426 kb on + strandat 5545.426 kb on + strandat 5545.522 kb on + strandat 5545.522 kb on + strandat 5545.736 kb on - strand, within PS417_25675at 5545.904 kb on - strand, within PS417_25675at 5546.069 kb on + strand, within PS417_25675at 5546.115 kb on - strand, within PS417_25675at 5546.164 kb on + strand, within PS417_25675at 5546.248 kb on + strand, within PS417_25675at 5546.383 kb on - strand, within PS417_25675at 5546.395 kb on + strand, within PS417_25675at 5546.395 kb on + strand, within PS417_25675at 5546.395 kb on + strand, within PS417_25675

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; liquid stress
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5,543,796 + PS417_25660 0.87 -0.3
5,543,933 - -0.2
5,543,973 + -0.3
5,543,973 + +0.3
5,544,012 + +0.5
5,544,013 - -1.3
5,544,031 - -0.0
5,544,033 + -0.7
5,544,033 + +1.1
5,544,033 + -0.1
5,544,033 + -0.1
5,544,034 - -0.7
5,544,034 - -0.1
5,544,034 - +0.2
5,544,034 - -0.5
5,544,034 - -0.7
5,544,064 + +1.1
5,544,496 - +0.5
5,544,496 - +0.2
5,544,505 + +0.8
5,544,825 - PS417_25670 0.31 -0.1
5,544,853 + PS417_25670 0.34 -0.4
5,544,854 - PS417_25670 0.34 +0.3
5,544,862 + PS417_25670 0.35 -0.9
5,545,111 - PS417_25670 0.61 -1.4
5,545,161 + PS417_25670 0.66 -0.4
5,545,357 + PS417_25670 0.87 -0.6
5,545,358 - PS417_25670 0.87 +0.0
5,545,426 + -1.1
5,545,426 + +0.2
5,545,426 + -0.0
5,545,426 + +0.2
5,545,522 + +0.8
5,545,522 + +0.0
5,545,736 - PS417_25675 0.19 -0.5
5,545,904 - PS417_25675 0.36 -1.4
5,546,069 + PS417_25675 0.54 -0.4
5,546,115 - PS417_25675 0.59 +0.3
5,546,164 + PS417_25675 0.64 +1.0
5,546,248 + PS417_25675 0.72 -2.0
5,546,383 - PS417_25675 0.87 -0.1
5,546,395 + PS417_25675 0.88 -0.2
5,546,395 + PS417_25675 0.88 -0.3
5,546,395 + PS417_25675 0.88 +0.9

Or see this region's nucleotide sequence