Strain Fitness in Pseudomonas simiae WCS417 around PS417_01405

Experiment: Scopoletin 3 mM; liquid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_01395 and PS417_01400 are separated by 26 nucleotidesPS417_01400 and PS417_01405 are separated by 5 nucleotidesPS417_01405 and PS417_01410 overlap by 23 nucleotidesPS417_01410 and PS417_01415 overlap by 11 nucleotides PS417_01395: PS417_01395 - biofilm formation protein PelB, at 306,182 to 309,781 _01395 PS417_01400: PS417_01400 - hypothetical protein, at 309,808 to 310,326 _01400 PS417_01405: PS417_01405 - sugar transporter, at 310,332 to 311,699 _01405 PS417_01410: PS417_01410 - transporter, at 311,677 to 312,672 _01410 PS417_01415: PS417_01415 - glycosyl transferase family 1, at 312,662 to 314,176 _01415 Position (kb) 310 311 312Strain fitness (log2 ratio) -1 0 1 2at 309.356 kb on + strand, within PS417_01395at 309.357 kb on - strand, within PS417_01395at 309.392 kb on + strand, within PS417_01395at 309.393 kb on - strandat 309.393 kb on - strand, within PS417_01395at 309.393 kb on - strand, within PS417_01395at 309.519 kb on - strandat 309.519 kb on - strandat 309.578 kb on + strandat 309.579 kb on - strandat 309.635 kb on + strandat 309.635 kb on + strandat 309.636 kb on - strandat 309.636 kb on - strandat 309.758 kb on + strandat 309.793 kb on - strandat 309.845 kb on + strandat 309.846 kb on - strandat 309.938 kb on - strand, within PS417_01400at 310.148 kb on - strand, within PS417_01400at 310.403 kb on - strandat 310.599 kb on + strand, within PS417_01405at 310.602 kb on - strandat 310.714 kb on - strand, within PS417_01405at 311.596 kb on + strandat 311.649 kb on - strandat 311.649 kb on - strandat 311.659 kb on - strandat 311.659 kb on - strandat 311.950 kb on + strand, within PS417_01410at 311.951 kb on - strand, within PS417_01410at 311.951 kb on - strand, within PS417_01410at 311.951 kb on - strand, within PS417_01410at 312.323 kb on - strand, within PS417_01410at 312.577 kb on + strandat 312.671 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
remove
309,356 + PS417_01395 0.88 +0.8
309,357 - PS417_01395 0.88 +2.4
309,392 + PS417_01395 0.89 +1.0
309,393 - +0.9
309,393 - PS417_01395 0.89 +1.0
309,393 - PS417_01395 0.89 +1.2
309,519 - +1.4
309,519 - +1.0
309,578 + +2.3
309,579 - +1.0
309,635 + +0.4
309,635 + +1.1
309,636 - +0.6
309,636 - +0.6
309,758 + +0.9
309,793 - +0.7
309,845 + +0.9
309,846 - +0.8
309,938 - PS417_01400 0.25 +1.0
310,148 - PS417_01400 0.66 +0.8
310,403 - +0.1
310,599 + PS417_01405 0.20 +0.9
310,602 - +0.7
310,714 - PS417_01405 0.28 +1.2
311,596 + +0.9
311,649 - +1.0
311,649 - +1.3
311,659 - +1.0
311,659 - +0.6
311,950 + PS417_01410 0.27 +0.6
311,951 - PS417_01410 0.28 +1.0
311,951 - PS417_01410 0.28 +1.7
311,951 - PS417_01410 0.28 +0.9
312,323 - PS417_01410 0.65 +0.9
312,577 + +0.1
312,671 - +0.8

Or see this region's nucleotide sequence