Strain Fitness in Pseudomonas simiae WCS417 around PS417_26525

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26520 and PS417_26525 are separated by 221 nucleotidesPS417_26525 and PS417_26530 are separated by 226 nucleotidesPS417_26530 and PS417_26535 are separated by 32 nucleotides PS417_26520: PS417_26520 - amino acid ABC transporter substrate-binding protein, at 5,735,619 to 5,736,410 _26520 PS417_26525: PS417_26525 - DEAD/DEAH box helicase, at 5,736,632 to 5,738,512 _26525 PS417_26530: PS417_26530 - hypothetical protein, at 5,738,739 to 5,739,317 _26530 PS417_26535: PS417_26535 - cytochrome B561, at 5,739,350 to 5,739,901 _26535 Position (kb) 5736 5737 5738 5739Strain fitness (log2 ratio) -2 -1 0 1 2at 5735.658 kb on - strandat 5735.658 kb on - strandat 5735.658 kb on - strandat 5735.680 kb on - strandat 5735.722 kb on - strand, within PS417_26520at 5735.722 kb on - strand, within PS417_26520at 5735.722 kb on - strand, within PS417_26520at 5735.722 kb on - strand, within PS417_26520at 5735.722 kb on - strand, within PS417_26520at 5735.722 kb on - strand, within PS417_26520at 5735.728 kb on - strand, within PS417_26520at 5736.031 kb on - strand, within PS417_26520at 5736.342 kb on + strandat 5736.421 kb on - strandat 5736.421 kb on - strandat 5736.422 kb on + strandat 5736.423 kb on - strandat 5736.423 kb on - strandat 5736.423 kb on - strandat 5736.613 kb on - strandat 5736.613 kb on - strandat 5736.616 kb on + strandat 5736.627 kb on + strandat 5736.628 kb on - strandat 5736.666 kb on + strandat 5736.667 kb on - strandat 5736.693 kb on - strandat 5736.693 kb on - strandat 5736.703 kb on + strandat 5736.703 kb on + strandat 5736.704 kb on - strandat 5736.775 kb on + strandat 5736.781 kb on + strandat 5736.936 kb on - strand, within PS417_26525at 5736.936 kb on - strand, within PS417_26525at 5736.936 kb on - strand, within PS417_26525at 5736.968 kb on - strand, within PS417_26525at 5737.315 kb on - strand, within PS417_26525at 5737.628 kb on + strand, within PS417_26525at 5737.628 kb on + strand, within PS417_26525at 5737.628 kb on + strand, within PS417_26525at 5737.629 kb on - strand, within PS417_26525at 5738.093 kb on + strand, within PS417_26525at 5738.094 kb on - strand, within PS417_26525at 5738.740 kb on + strandat 5739.164 kb on + strand, within PS417_26530at 5739.241 kb on + strand, within PS417_26530at 5739.325 kb on - strandat 5739.463 kb on - strand, within PS417_26535

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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5,735,658 - -0.7
5,735,658 - +0.0
5,735,658 - +1.0
5,735,680 - -0.2
5,735,722 - PS417_26520 0.13 +0.4
5,735,722 - PS417_26520 0.13 -1.3
5,735,722 - PS417_26520 0.13 +0.0
5,735,722 - PS417_26520 0.13 -0.6
5,735,722 - PS417_26520 0.13 -0.2
5,735,722 - PS417_26520 0.13 -0.3
5,735,728 - PS417_26520 0.14 -0.5
5,736,031 - PS417_26520 0.52 -1.0
5,736,342 + +2.3
5,736,421 - +0.4
5,736,421 - -0.2
5,736,422 + +0.1
5,736,423 - -0.6
5,736,423 - -0.4
5,736,423 - -0.8
5,736,613 - +0.1
5,736,613 - -0.8
5,736,616 + +0.1
5,736,627 + -0.1
5,736,628 - -1.0
5,736,666 + -0.0
5,736,667 - -0.4
5,736,693 - -0.9
5,736,693 - -0.7
5,736,703 + -0.0
5,736,703 + -0.4
5,736,704 - -0.4
5,736,775 + -0.7
5,736,781 + -0.8
5,736,936 - PS417_26525 0.16 -1.3
5,736,936 - PS417_26525 0.16 -1.0
5,736,936 - PS417_26525 0.16 -1.0
5,736,968 - PS417_26525 0.18 +0.5
5,737,315 - PS417_26525 0.36 -2.2
5,737,628 + PS417_26525 0.53 -0.2
5,737,628 + PS417_26525 0.53 -0.8
5,737,628 + PS417_26525 0.53 +0.3
5,737,629 - PS417_26525 0.53 -0.9
5,738,093 + PS417_26525 0.78 -0.9
5,738,094 - PS417_26525 0.78 -1.4
5,738,740 + -0.8
5,739,164 + PS417_26530 0.73 -1.5
5,739,241 + PS417_26530 0.87 +0.3
5,739,325 - +0.0
5,739,463 - PS417_26535 0.20 +0.2

Or see this region's nucleotide sequence