Strain Fitness in Pseudomonas simiae WCS417 around PS417_23025

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23020 and PS417_23025 are separated by 287 nucleotidesPS417_23025 and PS417_23030 are separated by 136 nucleotidesPS417_23030 and PS417_23035 are separated by 2 nucleotides PS417_23020: PS417_23020 - phosphoribosylformylglycinamidine synthase, at 4,984,438 to 4,988,334 _23020 PS417_23025: PS417_23025 - murein transglycosylase, at 4,988,622 to 4,990,082 _23025 PS417_23030: PS417_23030 - PTS glucose transporter subunit IIB, at 4,990,219 to 4,990,497 _23030 PS417_23035: PS417_23035 - D-trehalose PTS system, I, HPr, and IIA components (from data), at 4,990,500 to 4,993,016 _23035 Position (kb) 4988 4989 4990 4991Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4988.452 kb on + strandat 4988.453 kb on - strandat 4988.610 kb on + strandat 4988.612 kb on + strandat 4988.708 kb on + strandat 4988.746 kb on + strandat 4988.974 kb on + strand, within PS417_23025at 4989.018 kb on + strand, within PS417_23025at 4989.019 kb on - strand, within PS417_23025at 4989.145 kb on - strand, within PS417_23025at 4989.252 kb on + strand, within PS417_23025at 4989.252 kb on + strand, within PS417_23025at 4989.252 kb on + strand, within PS417_23025at 4989.358 kb on - strandat 4989.365 kb on + strand, within PS417_23025at 4989.366 kb on - strand, within PS417_23025at 4989.408 kb on + strand, within PS417_23025at 4989.408 kb on + strand, within PS417_23025at 4989.411 kb on + strand, within PS417_23025at 4989.436 kb on - strand, within PS417_23025at 4989.448 kb on - strand, within PS417_23025at 4989.448 kb on - strand, within PS417_23025at 4989.448 kb on - strand, within PS417_23025at 4989.486 kb on + strand, within PS417_23025at 4989.486 kb on + strand, within PS417_23025at 4989.696 kb on + strand, within PS417_23025at 4989.891 kb on + strand, within PS417_23025at 4989.892 kb on - strand, within PS417_23025at 4989.963 kb on + strandat 4989.963 kb on + strandat 4989.974 kb on + strandat 4989.974 kb on + strandat 4989.975 kb on - strandat 4989.997 kb on + strandat 4989.997 kb on + strandat 4990.080 kb on + strandat 4990.080 kb on + strandat 4990.081 kb on - strandat 4990.103 kb on - strandat 4990.108 kb on + strandat 4990.220 kb on + strandat 4990.871 kb on - strand, within PS417_23035

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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4,988,452 + +0.5
4,988,453 - +0.2
4,988,610 + +0.9
4,988,612 + -0.1
4,988,708 + -0.9
4,988,746 + +0.4
4,988,974 + PS417_23025 0.24 -0.2
4,989,018 + PS417_23025 0.27 +0.7
4,989,019 - PS417_23025 0.27 -0.3
4,989,145 - PS417_23025 0.36 -3.3
4,989,252 + PS417_23025 0.43 -1.1
4,989,252 + PS417_23025 0.43 +1.2
4,989,252 + PS417_23025 0.43 +0.4
4,989,358 - +1.4
4,989,365 + PS417_23025 0.51 -0.5
4,989,366 - PS417_23025 0.51 -0.6
4,989,408 + PS417_23025 0.54 -2.5
4,989,408 + PS417_23025 0.54 +1.0
4,989,411 + PS417_23025 0.54 +0.0
4,989,436 - PS417_23025 0.56 -0.3
4,989,448 - PS417_23025 0.57 +2.0
4,989,448 - PS417_23025 0.57 -1.4
4,989,448 - PS417_23025 0.57 -0.5
4,989,486 + PS417_23025 0.59 +1.4
4,989,486 + PS417_23025 0.59 -1.1
4,989,696 + PS417_23025 0.74 -0.3
4,989,891 + PS417_23025 0.87 -0.8
4,989,892 - PS417_23025 0.87 -1.5
4,989,963 + -0.2
4,989,963 + -0.9
4,989,974 + -0.9
4,989,974 + +0.6
4,989,975 - -0.8
4,989,997 + +1.5
4,989,997 + +0.7
4,990,080 + +0.4
4,990,080 + +0.0
4,990,081 - +1.8
4,990,103 - -0.3
4,990,108 + +0.3
4,990,220 + +0.4
4,990,871 - PS417_23035 0.15 -0.5

Or see this region's nucleotide sequence