Strain Fitness in Pseudomonas simiae WCS417 around PS417_21480

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21470 and PS417_21475 are separated by 21 nucleotidesPS417_21475 and PS417_21480 overlap by 14 nucleotidesPS417_21480 and PS417_21485 are separated by 768 nucleotides PS417_21470: PS417_21470 - peptidase S49, at 4,659,750 to 4,660,733 _21470 PS417_21475: PS417_21475 - HAD family hydrolase, at 4,660,755 to 4,661,417 _21475 PS417_21480: PS417_21480 - 23S rRNA pseudouridylate synthase, at 4,661,404 to 4,662,363 _21480 PS417_21485: PS417_21485 - ribonuclease E, at 4,663,132 to 4,666,278 _21485 Position (kb) 4661 4662 4663Strain fitness (log2 ratio) -2 -1 0 1at 4660.451 kb on + strand, within PS417_21470at 4660.513 kb on + strand, within PS417_21470at 4660.513 kb on + strand, within PS417_21470at 4660.513 kb on + strand, within PS417_21470at 4660.514 kb on - strand, within PS417_21470at 4660.514 kb on - strand, within PS417_21470at 4660.514 kb on - strand, within PS417_21470at 4660.514 kb on - strand, within PS417_21470at 4660.514 kb on - strand, within PS417_21470at 4660.514 kb on - strand, within PS417_21470at 4660.672 kb on - strandat 4660.686 kb on - strandat 4660.686 kb on - strandat 4660.686 kb on - strandat 4660.757 kb on - strandat 4660.757 kb on - strandat 4660.819 kb on + strandat 4660.852 kb on + strand, within PS417_21475at 4660.852 kb on + strand, within PS417_21475at 4660.852 kb on + strand, within PS417_21475at 4661.179 kb on + strand, within PS417_21475at 4661.179 kb on + strand, within PS417_21475at 4661.179 kb on + strand, within PS417_21475at 4661.401 kb on + strandat 4661.508 kb on - strand, within PS417_21480at 4661.832 kb on - strand, within PS417_21480at 4662.376 kb on - strandat 4662.726 kb on + strandat 4662.726 kb on + strandat 4662.772 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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4,660,451 + PS417_21470 0.71 +0.1
4,660,513 + PS417_21470 0.78 -0.1
4,660,513 + PS417_21470 0.78 +0.1
4,660,513 + PS417_21470 0.78 +0.9
4,660,514 - PS417_21470 0.78 +1.4
4,660,514 - PS417_21470 0.78 +0.3
4,660,514 - PS417_21470 0.78 +0.4
4,660,514 - PS417_21470 0.78 -0.4
4,660,514 - PS417_21470 0.78 +1.0
4,660,514 - PS417_21470 0.78 +0.3
4,660,672 - +0.6
4,660,686 - +0.4
4,660,686 - -0.1
4,660,686 - -0.0
4,660,757 - +0.5
4,660,757 - -0.1
4,660,819 + -0.4
4,660,852 + PS417_21475 0.15 -0.4
4,660,852 + PS417_21475 0.15 +0.1
4,660,852 + PS417_21475 0.15 +0.5
4,661,179 + PS417_21475 0.64 +0.5
4,661,179 + PS417_21475 0.64 -1.8
4,661,179 + PS417_21475 0.64 -0.7
4,661,401 + +0.9
4,661,508 - PS417_21480 0.11 -0.4
4,661,832 - PS417_21480 0.45 -1.7
4,662,376 - -1.3
4,662,726 + -1.3
4,662,726 + -0.3
4,662,772 + -1.1

Or see this region's nucleotide sequence