Experiment: 80% Methanol 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20870 and PS417_20875 are separated by 259 nucleotides PS417_20875 and PS417_20880 are separated by 2 nucleotides PS417_20880 and PS417_20885 are separated by 280 nucleotides
PS417_20870: PS417_20870 - cell division protein ZipA, at 4,533,661 to 4,534,524
_20870
PS417_20875: PS417_20875 - chromosome segregation protein SMC, at 4,534,784 to 4,538,272
_20875
PS417_20880: PS417_20880 - GntR family transcriptional regulator, at 4,538,275 to 4,538,934
_20880
PS417_20885: PS417_20885 - Xanthine dehydrogenase (EC 1.17.1.4) (from data) , at 4,539,215 to 4,540,663
_20885
Position (kb)
4534
4535
4536
4537
4538
4539 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4534.590 kb on - strand at 4534.710 kb on - strand at 4535.173 kb on - strand, within PS417_20875 at 4535.224 kb on + strand, within PS417_20875 at 4535.225 kb on - strand, within PS417_20875 at 4535.344 kb on + strand, within PS417_20875 at 4537.392 kb on + strand, within PS417_20875 at 4537.392 kb on + strand, within PS417_20875 at 4537.621 kb on - strand, within PS417_20875 at 4537.755 kb on + strand, within PS417_20875 at 4537.790 kb on - strand, within PS417_20875 at 4537.790 kb on - strand, within PS417_20875 at 4537.929 kb on + strand at 4537.929 kb on + strand at 4537.930 kb on - strand at 4537.930 kb on - strand at 4538.442 kb on - strand, within PS417_20880 at 4538.666 kb on + strand, within PS417_20880 at 4538.666 kb on + strand, within PS417_20880 at 4538.962 kb on - strand at 4538.978 kb on - strand at 4539.090 kb on + strand at 4539.091 kb on - strand at 4539.165 kb on - strand at 4539.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress remove 4,534,590 - +3.6 4,534,710 - +1.0 4,535,173 - PS417_20875 0.11 +1.0 4,535,224 + PS417_20875 0.13 -1.2 4,535,225 - PS417_20875 0.13 +1.2 4,535,344 + PS417_20875 0.16 -0.6 4,537,392 + PS417_20875 0.75 +0.8 4,537,392 + PS417_20875 0.75 -0.3 4,537,621 - PS417_20875 0.81 -1.4 4,537,755 + PS417_20875 0.85 -1.2 4,537,790 - PS417_20875 0.86 -0.6 4,537,790 - PS417_20875 0.86 -0.2 4,537,929 + +0.4 4,537,929 + -0.0 4,537,930 - -0.1 4,537,930 - -0.9 4,538,442 - PS417_20880 0.25 +0.2 4,538,666 + PS417_20880 0.59 -0.7 4,538,666 + PS417_20880 0.59 -1.2 4,538,962 - -0.4 4,538,978 - +1.1 4,539,090 + -0.7 4,539,091 - +0.3 4,539,165 - +0.1 4,539,193 + -0.2
Or see this region's nucleotide sequence