Strain Fitness in Pseudomonas simiae WCS417 around PS417_20780

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20775 and PS417_20780 are separated by 1 nucleotidesPS417_20780 and PS417_20785 are separated by 152 nucleotidesPS417_20785 and PS417_20790 are separated by 80 nucleotides PS417_20775: PS417_20775 - coproporphyrinogen III oxidase, at 4,513,584 to 4,514,966 _20775 PS417_20780: PS417_20780 - hypothetical protein, at 4,514,968 to 4,515,435 _20780 PS417_20785: PS417_20785 - transcriptional regulator, at 4,515,588 to 4,516,322 _20785 PS417_20790: PS417_20790 - adenine phosphoribosyltransferase, at 4,516,403 to 4,516,951 _20790 Position (kb) 4514 4515 4516Strain fitness (log2 ratio) -1 0 1 2 3 4at 4514.445 kb on + strand, within PS417_20775at 4514.532 kb on + strand, within PS417_20775at 4514.532 kb on + strand, within PS417_20775at 4514.923 kb on - strandat 4515.073 kb on + strand, within PS417_20780at 4515.073 kb on + strand, within PS417_20780at 4515.073 kb on + strand, within PS417_20780at 4515.073 kb on + strand, within PS417_20780at 4515.074 kb on - strand, within PS417_20780at 4515.126 kb on + strand, within PS417_20780at 4515.127 kb on - strand, within PS417_20780at 4515.416 kb on + strandat 4515.416 kb on + strandat 4515.417 kb on - strandat 4515.454 kb on + strandat 4515.454 kb on + strandat 4515.455 kb on - strandat 4515.455 kb on - strandat 4515.455 kb on - strandat 4515.458 kb on + strandat 4515.459 kb on - strandat 4515.459 kb on - strandat 4515.459 kb on - strandat 4515.459 kb on - strandat 4515.459 kb on - strandat 4515.459 kb on - strandat 4515.558 kb on + strandat 4515.558 kb on + strandat 4515.558 kb on + strandat 4515.558 kb on + strandat 4515.784 kb on + strand, within PS417_20785at 4515.784 kb on + strand, within PS417_20785at 4515.784 kb on + strand, within PS417_20785at 4516.180 kb on - strand, within PS417_20785at 4516.269 kb on - strandat 4516.363 kb on + strandat 4516.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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4,514,445 + PS417_20775 0.62 +1.0
4,514,532 + PS417_20775 0.69 +0.1
4,514,532 + PS417_20775 0.69 -0.7
4,514,923 - -0.5
4,515,073 + PS417_20780 0.22 -1.0
4,515,073 + PS417_20780 0.22 -0.6
4,515,073 + PS417_20780 0.22 +0.0
4,515,073 + PS417_20780 0.22 -0.6
4,515,074 - PS417_20780 0.23 -0.3
4,515,126 + PS417_20780 0.34 -0.7
4,515,127 - PS417_20780 0.34 -1.1
4,515,416 + -0.5
4,515,416 + -0.4
4,515,417 - -0.8
4,515,454 + +0.3
4,515,454 + +0.1
4,515,455 - -0.1
4,515,455 - -0.6
4,515,455 - -0.4
4,515,458 + +0.1
4,515,459 - +0.9
4,515,459 - -0.3
4,515,459 - -0.5
4,515,459 - -0.8
4,515,459 - -1.0
4,515,459 - -0.2
4,515,558 + +1.7
4,515,558 + -0.3
4,515,558 + +0.6
4,515,558 + +0.2
4,515,784 + PS417_20785 0.27 -0.9
4,515,784 + PS417_20785 0.27 -0.9
4,515,784 + PS417_20785 0.27 -0.9
4,516,180 - PS417_20785 0.81 -0.3
4,516,269 - +4.0
4,516,363 + +0.0
4,516,366 - -0.5

Or see this region's nucleotide sequence