Strain Fitness in Pseudomonas simiae WCS417 around PS417_19660

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19650 and PS417_19655 are separated by 81 nucleotidesPS417_19655 and PS417_19660 overlap by 1 nucleotidesPS417_19660 and PS417_19665 are separated by 51 nucleotidesPS417_19665 and PS417_19670 are separated by 15 nucleotides PS417_19650: PS417_19650 - chemotaxis protein CheW, at 4,271,637 to 4,272,119 _19650 PS417_19655: PS417_19655 - chemotaxis protein CheW, at 4,272,201 to 4,272,989 _19655 PS417_19660: PS417_19660 - cobalamin biosynthesis protein CobQ, at 4,272,989 to 4,273,777 _19660 PS417_19665: PS417_19665 - flagellar motor protein MotD, at 4,273,829 to 4,274,716 _19665 PS417_19670: PS417_19670 - flagellar motor protein, at 4,274,732 to 4,275,472 _19670 Position (kb) 4272 4273 4274Strain fitness (log2 ratio) -2 -1 0 1 2at 4272.040 kb on + strand, within PS417_19650at 4272.040 kb on + strand, within PS417_19650at 4272.040 kb on + strand, within PS417_19650at 4272.066 kb on - strand, within PS417_19650at 4272.120 kb on - strandat 4272.146 kb on + strandat 4272.147 kb on - strandat 4272.159 kb on + strandat 4272.159 kb on + strandat 4272.160 kb on - strandat 4272.166 kb on - strandat 4272.287 kb on + strand, within PS417_19655at 4272.287 kb on + strand, within PS417_19655at 4272.288 kb on - strand, within PS417_19655at 4272.288 kb on - strand, within PS417_19655at 4272.288 kb on - strand, within PS417_19655at 4272.583 kb on + strand, within PS417_19655at 4273.052 kb on + strandat 4273.052 kb on + strandat 4273.134 kb on + strand, within PS417_19660at 4273.134 kb on + strand, within PS417_19660at 4273.134 kb on + strand, within PS417_19660at 4273.599 kb on + strand, within PS417_19660at 4273.600 kb on - strand, within PS417_19660at 4273.638 kb on + strand, within PS417_19660at 4273.639 kb on - strand, within PS417_19660at 4273.825 kb on - strandat 4273.825 kb on - strandat 4274.094 kb on - strand, within PS417_19665at 4274.094 kb on - strand, within PS417_19665at 4274.581 kb on - strand, within PS417_19665at 4274.581 kb on - strand, within PS417_19665at 4274.610 kb on + strand, within PS417_19665at 4274.610 kb on + strand, within PS417_19665at 4274.723 kb on + strandat 4274.723 kb on + strandat 4274.724 kb on - strandat 4274.724 kb on - strandat 4274.724 kb on - strandat 4274.724 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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4,272,040 + PS417_19650 0.83 +0.3
4,272,040 + PS417_19650 0.83 +2.4
4,272,040 + PS417_19650 0.83 -1.2
4,272,066 - PS417_19650 0.89 -0.4
4,272,120 - -0.2
4,272,146 + -0.7
4,272,147 - +1.6
4,272,159 + -0.7
4,272,159 + -1.7
4,272,160 - +0.3
4,272,166 - -0.1
4,272,287 + PS417_19655 0.11 -0.9
4,272,287 + PS417_19655 0.11 -1.1
4,272,288 - PS417_19655 0.11 +0.0
4,272,288 - PS417_19655 0.11 -0.3
4,272,288 - PS417_19655 0.11 -0.2
4,272,583 + PS417_19655 0.48 -1.0
4,273,052 + +1.0
4,273,052 + -0.3
4,273,134 + PS417_19660 0.18 -0.8
4,273,134 + PS417_19660 0.18 -0.4
4,273,134 + PS417_19660 0.18 -1.0
4,273,599 + PS417_19660 0.77 -0.9
4,273,600 - PS417_19660 0.77 -1.0
4,273,638 + PS417_19660 0.82 -0.9
4,273,639 - PS417_19660 0.82 -2.6
4,273,825 - -0.1
4,273,825 - +0.9
4,274,094 - PS417_19665 0.30 -0.1
4,274,094 - PS417_19665 0.30 +0.6
4,274,581 - PS417_19665 0.85 +0.5
4,274,581 - PS417_19665 0.85 +1.2
4,274,610 + PS417_19665 0.88 +0.4
4,274,610 + PS417_19665 0.88 -0.0
4,274,723 + +1.0
4,274,723 + +1.0
4,274,724 - -0.6
4,274,724 - -0.0
4,274,724 - -0.1
4,274,724 - -0.0

Or see this region's nucleotide sequence