Strain Fitness in Pseudomonas simiae WCS417 around PS417_15955

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15950 and PS417_15955 are separated by 99 nucleotidesPS417_15955 and PS417_15960 are separated by 2 nucleotides PS417_15950: PS417_15950 - major facilitator transporter, at 3,489,924 to 3,491,129 _15950 PS417_15955: PS417_15955 - secretion protein HylD, at 3,491,229 to 3,492,335 _15955 PS417_15960: PS417_15960 - multidrug transporter, at 3,492,338 to 3,495,421 _15960 Position (kb) 3491 3492 3493Strain fitness (log2 ratio) -1 0 1at 3490.330 kb on + strand, within PS417_15950at 3490.331 kb on - strand, within PS417_15950at 3490.381 kb on + strand, within PS417_15950at 3490.412 kb on + strand, within PS417_15950at 3490.456 kb on + strand, within PS417_15950at 3490.457 kb on - strand, within PS417_15950at 3490.457 kb on - strand, within PS417_15950at 3490.752 kb on + strand, within PS417_15950at 3490.753 kb on - strand, within PS417_15950at 3490.753 kb on - strandat 3490.876 kb on + strand, within PS417_15950at 3491.188 kb on - strandat 3491.454 kb on - strand, within PS417_15955at 3492.001 kb on - strand, within PS417_15955at 3492.052 kb on + strand, within PS417_15955at 3492.629 kb on + strandat 3492.630 kb on - strandat 3492.630 kb on - strandat 3492.672 kb on - strand, within PS417_15960at 3492.762 kb on - strand, within PS417_15960at 3492.917 kb on + strand, within PS417_15960at 3493.029 kb on - strand, within PS417_15960at 3493.140 kb on - strand, within PS417_15960

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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3,490,330 + PS417_15950 0.34 +0.2
3,490,331 - PS417_15950 0.34 +0.4
3,490,381 + PS417_15950 0.38 -0.2
3,490,412 + PS417_15950 0.40 -0.8
3,490,456 + PS417_15950 0.44 -0.3
3,490,457 - PS417_15950 0.44 +0.2
3,490,457 - PS417_15950 0.44 +0.8
3,490,752 + PS417_15950 0.69 -0.8
3,490,753 - PS417_15950 0.69 +0.3
3,490,753 - -0.1
3,490,876 + PS417_15950 0.79 -0.2
3,491,188 - +0.0
3,491,454 - PS417_15955 0.20 -1.3
3,492,001 - PS417_15955 0.70 -0.0
3,492,052 + PS417_15955 0.74 -1.7
3,492,629 + +0.0
3,492,630 - -0.3
3,492,630 - +0.3
3,492,672 - PS417_15960 0.11 -0.3
3,492,762 - PS417_15960 0.14 -0.1
3,492,917 + PS417_15960 0.19 -0.6
3,493,029 - PS417_15960 0.22 -0.3
3,493,140 - PS417_15960 0.26 -0.6

Or see this region's nucleotide sequence