Strain Fitness in Pseudomonas simiae WCS417 around PS417_15400

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15390 and PS417_15395 are separated by 36 nucleotidesPS417_15395 and PS417_15400 are separated by 131 nucleotidesPS417_15400 and PS417_15405 overlap by 26 nucleotidesPS417_15405 and PS417_15410 are separated by 96 nucleotides PS417_15390: PS417_15390 - hypothetical protein, at 3,375,691 to 3,376,032 _15390 PS417_15395: PS417_15395 - ATPase, at 3,376,069 to 3,376,713 _15395 PS417_15400: PS417_15400 - hypothetical protein, at 3,376,845 to 3,377,117 _15400 PS417_15405: PS417_15405 - glutathione S-transferase, at 3,377,092 to 3,377,709 _15405 PS417_15410: PS417_15410 - hypothetical protein, at 3,377,806 to 3,378,354 _15410 Position (kb) 3376 3377 3378Strain fitness (log2 ratio) -2 -1 0 1at 3376.235 kb on + strand, within PS417_15395at 3376.235 kb on + strand, within PS417_15395at 3376.235 kb on + strand, within PS417_15395at 3376.236 kb on - strand, within PS417_15395at 3376.236 kb on - strand, within PS417_15395at 3376.236 kb on - strand, within PS417_15395at 3376.373 kb on + strand, within PS417_15395at 3376.526 kb on + strand, within PS417_15395at 3376.561 kb on + strand, within PS417_15395at 3376.561 kb on + strand, within PS417_15395at 3376.562 kb on - strand, within PS417_15395at 3376.562 kb on - strand, within PS417_15395at 3376.562 kb on - strand, within PS417_15395at 3376.562 kb on - strand, within PS417_15395at 3376.594 kb on + strand, within PS417_15395at 3376.594 kb on + strand, within PS417_15395at 3376.595 kb on - strandat 3376.595 kb on - strand, within PS417_15395at 3376.595 kb on - strand, within PS417_15395at 3376.612 kb on + strand, within PS417_15395at 3376.613 kb on - strand, within PS417_15395at 3376.833 kb on - strandat 3376.891 kb on + strand, within PS417_15400at 3376.921 kb on - strand, within PS417_15400at 3377.093 kb on + strandat 3377.160 kb on - strand, within PS417_15405at 3377.180 kb on - strand, within PS417_15405at 3377.419 kb on + strand, within PS417_15405at 3377.420 kb on - strand, within PS417_15405at 3377.493 kb on - strand, within PS417_15405at 3377.536 kb on + strand, within PS417_15405at 3377.684 kb on + strandat 3377.685 kb on - strandat 3377.685 kb on - strandat 3377.685 kb on - strandat 3377.688 kb on + strandat 3377.688 kb on + strandat 3377.688 kb on + strandat 3377.689 kb on - strandat 3377.689 kb on - strandat 3377.689 kb on - strandat 3377.699 kb on + strandat 3377.699 kb on + strandat 3377.700 kb on - strandat 3377.807 kb on + strandat 3378.018 kb on - strand, within PS417_15410at 3378.114 kb on + strand, within PS417_15410

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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3,376,235 + PS417_15395 0.26 +0.4
3,376,235 + PS417_15395 0.26 -0.3
3,376,235 + PS417_15395 0.26 -0.4
3,376,236 - PS417_15395 0.26 +1.2
3,376,236 - PS417_15395 0.26 -0.5
3,376,236 - PS417_15395 0.26 -0.2
3,376,373 + PS417_15395 0.47 -1.0
3,376,526 + PS417_15395 0.71 +0.2
3,376,561 + PS417_15395 0.76 -0.0
3,376,561 + PS417_15395 0.76 -0.9
3,376,562 - PS417_15395 0.76 +0.1
3,376,562 - PS417_15395 0.76 -0.5
3,376,562 - PS417_15395 0.76 -0.6
3,376,562 - PS417_15395 0.76 +0.4
3,376,594 + PS417_15395 0.81 +0.9
3,376,594 + PS417_15395 0.81 -0.3
3,376,595 - +0.6
3,376,595 - PS417_15395 0.82 -1.3
3,376,595 - PS417_15395 0.82 -1.2
3,376,612 + PS417_15395 0.84 -0.3
3,376,613 - PS417_15395 0.84 -0.1
3,376,833 - -0.5
3,376,891 + PS417_15400 0.17 -0.6
3,376,921 - PS417_15400 0.28 -1.6
3,377,093 + -0.3
3,377,160 - PS417_15405 0.11 -0.2
3,377,180 - PS417_15405 0.14 -0.2
3,377,419 + PS417_15405 0.53 -0.2
3,377,420 - PS417_15405 0.53 -0.5
3,377,493 - PS417_15405 0.65 +0.2
3,377,536 + PS417_15405 0.72 -0.2
3,377,684 + -0.5
3,377,685 - -0.6
3,377,685 - +0.0
3,377,685 - +0.0
3,377,688 + +0.0
3,377,688 + -0.3
3,377,688 + +0.5
3,377,689 - -0.9
3,377,689 - +0.5
3,377,689 - -0.3
3,377,699 + -2.5
3,377,699 + +1.4
3,377,700 - -1.0
3,377,807 + -1.8
3,378,018 - PS417_15410 0.39 -0.1
3,378,114 + PS417_15410 0.56 +0.2

Or see this region's nucleotide sequence