Strain Fitness in Pseudomonas simiae WCS417 around PS417_08590

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08585 and PS417_08590 overlap by 4 nucleotidesPS417_08590 and PS417_08595 are separated by 38 nucleotides PS417_08585: PS417_08585 - ATPase AAA, at 1,875,118 to 1,876,008 _08585 PS417_08590: PS417_08590 - hypothetical protein, at 1,876,005 to 1,876,487 _08590 PS417_08595: PS417_08595 - histidine kinase, at 1,876,526 to 1,880,173 _08595 Position (kb) 1876 1877Strain fitness (log2 ratio) -2 -1 0 1 2at 1875.081 kb on - strandat 1875.114 kb on - strandat 1875.596 kb on + strand, within PS417_08585at 1875.644 kb on + strand, within PS417_08585at 1875.645 kb on - strand, within PS417_08585at 1875.652 kb on + strand, within PS417_08585at 1875.652 kb on + strand, within PS417_08585at 1875.653 kb on - strand, within PS417_08585at 1875.653 kb on - strand, within PS417_08585at 1875.807 kb on + strand, within PS417_08585at 1876.015 kb on + strandat 1876.016 kb on - strandat 1876.044 kb on + strandat 1876.045 kb on - strandat 1876.316 kb on + strand, within PS417_08590at 1876.422 kb on - strand, within PS417_08590at 1876.528 kb on - strandat 1876.528 kb on - strandat 1876.882 kb on + strandat 1876.882 kb on + strandat 1876.883 kb on - strandat 1876.883 kb on - strandat 1876.883 kb on - strandat 1877.075 kb on + strand, within PS417_08595at 1877.076 kb on - strand, within PS417_08595at 1877.082 kb on + strand, within PS417_08595at 1877.243 kb on + strand, within PS417_08595at 1877.243 kb on + strand, within PS417_08595at 1877.332 kb on + strand, within PS417_08595at 1877.339 kb on + strand, within PS417_08595at 1877.339 kb on + strand, within PS417_08595at 1877.340 kb on - strand, within PS417_08595at 1877.340 kb on - strand, within PS417_08595at 1877.344 kb on - strand, within PS417_08595at 1877.344 kb on - strand, within PS417_08595at 1877.344 kb on - strand, within PS417_08595at 1877.344 kb on - strand, within PS417_08595

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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1,875,081 - -0.5
1,875,114 - -0.1
1,875,596 + PS417_08585 0.54 +0.5
1,875,644 + PS417_08585 0.59 -0.8
1,875,645 - PS417_08585 0.59 +0.4
1,875,652 + PS417_08585 0.60 -0.1
1,875,652 + PS417_08585 0.60 -0.9
1,875,653 - PS417_08585 0.60 +0.1
1,875,653 - PS417_08585 0.60 -0.5
1,875,807 + PS417_08585 0.77 -2.0
1,876,015 + -0.0
1,876,016 - +0.2
1,876,044 + -0.1
1,876,045 - -0.0
1,876,316 + PS417_08590 0.64 -0.5
1,876,422 - PS417_08590 0.86 -1.7
1,876,528 - -0.7
1,876,528 - -0.1
1,876,882 + -0.2
1,876,882 + +0.4
1,876,883 - -0.5
1,876,883 - +0.6
1,876,883 - +0.0
1,877,075 + PS417_08595 0.15 -0.1
1,877,076 - PS417_08595 0.15 +1.9
1,877,082 + PS417_08595 0.15 +1.0
1,877,243 + PS417_08595 0.20 -0.0
1,877,243 + PS417_08595 0.20 +0.9
1,877,332 + PS417_08595 0.22 +1.6
1,877,339 + PS417_08595 0.22 -0.0
1,877,339 + PS417_08595 0.22 -0.4
1,877,340 - PS417_08595 0.22 +0.0
1,877,340 - PS417_08595 0.22 -0.4
1,877,344 - PS417_08595 0.22 +0.6
1,877,344 - PS417_08595 0.22 +0.8
1,877,344 - PS417_08595 0.22 -0.2
1,877,344 - PS417_08595 0.22 +0.1

Or see this region's nucleotide sequence