Strain Fitness in Pseudomonas simiae WCS417 around PS417_07470

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07465 and PS417_07470 are separated by 176 nucleotidesPS417_07470 and PS417_07475 overlap by 4 nucleotidesPS417_07475 and PS417_07480 overlap by 4 nucleotides PS417_07465: PS417_07465 - LysR family transcriptional regulator, at 1,641,627 to 1,642,565 _07465 PS417_07470: PS417_07470 - hypothetical protein, at 1,642,742 to 1,643,482 _07470 PS417_07475: PS417_07475 - allophanate hydrolase, at 1,643,479 to 1,644,183 _07475 PS417_07480: PS417_07480 - allophanate hydrolase, at 1,644,180 to 1,645,088 _07480 Position (kb) 1642 1643 1644Strain fitness (log2 ratio) -1 0 1 2at 1641.991 kb on + strand, within PS417_07465at 1641.992 kb on - strand, within PS417_07465at 1642.046 kb on - strandat 1642.046 kb on - strand, within PS417_07465at 1642.046 kb on - strand, within PS417_07465at 1642.419 kb on + strand, within PS417_07465at 1642.420 kb on - strand, within PS417_07465at 1642.693 kb on + strandat 1642.708 kb on + strandat 1642.725 kb on + strandat 1643.063 kb on + strand, within PS417_07470at 1643.217 kb on - strand, within PS417_07470at 1643.223 kb on + strand, within PS417_07470at 1643.415 kb on + strandat 1643.857 kb on + strand, within PS417_07475at 1644.035 kb on + strand, within PS417_07475at 1644.146 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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1,641,991 + PS417_07465 0.39 +0.6
1,641,992 - PS417_07465 0.39 -0.4
1,642,046 - -0.8
1,642,046 - PS417_07465 0.45 -0.0
1,642,046 - PS417_07465 0.45 +1.0
1,642,419 + PS417_07465 0.84 +2.0
1,642,420 - PS417_07465 0.84 +0.8
1,642,693 + -0.4
1,642,708 + +0.2
1,642,725 + -0.3
1,643,063 + PS417_07470 0.43 +0.6
1,643,217 - PS417_07470 0.64 -1.4
1,643,223 + PS417_07470 0.65 -0.9
1,643,415 + -0.2
1,643,857 + PS417_07475 0.54 +0.6
1,644,035 + PS417_07475 0.79 +0.8
1,644,146 + +0.4

Or see this region's nucleotide sequence