Strain Fitness in Pseudomonas simiae WCS417 around PS417_06205

Experiment: 80% Methanol 3 mM; liquid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_06200 and PS417_06205 are separated by 73 nucleotidesPS417_06205 and PS417_06210 are separated by 387 nucleotides PS417_06200: PS417_06200 - protein-PII uridylyltransferase, at 1,374,815 to 1,377,517 _06200 PS417_06205: PS417_06205 - methionine aminopeptidase, at 1,377,591 to 1,378,379 _06205 PS417_06210: PS417_06210 - 30S ribosomal protein S2, at 1,378,767 to 1,379,504 _06210 Position (kb) 1377 1378 1379Strain fitness (log2 ratio) -2 -1 0 1 2at 1376.592 kb on + strand, within PS417_06200at 1376.593 kb on - strandat 1376.593 kb on - strand, within PS417_06200at 1376.721 kb on + strand, within PS417_06200at 1377.535 kb on + strandat 1377.536 kb on - strandat 1377.539 kb on + strandat 1377.539 kb on + strandat 1377.540 kb on - strandat 1377.540 kb on - strandat 1377.586 kb on + strandat 1377.593 kb on - strandat 1377.620 kb on + strandat 1377.982 kb on + strand, within PS417_06205at 1377.982 kb on + strand, within PS417_06205at 1377.982 kb on + strand, within PS417_06205at 1377.982 kb on + strand, within PS417_06205at 1377.983 kb on - strand, within PS417_06205at 1377.983 kb on - strand, within PS417_06205at 1378.196 kb on - strand, within PS417_06205at 1378.224 kb on + strand, within PS417_06205at 1378.224 kb on + strand, within PS417_06205at 1378.233 kb on + strand, within PS417_06205at 1378.234 kb on - strand, within PS417_06205at 1378.235 kb on + strand, within PS417_06205at 1378.235 kb on + strand, within PS417_06205at 1378.235 kb on + strand, within PS417_06205at 1378.235 kb on + strand, within PS417_06205at 1378.236 kb on - strand, within PS417_06205at 1378.236 kb on - strand, within PS417_06205at 1378.236 kb on - strand, within PS417_06205at 1378.236 kb on - strand, within PS417_06205at 1378.236 kb on - strand, within PS417_06205at 1378.236 kb on - strand, within PS417_06205at 1378.237 kb on + strand, within PS417_06205at 1378.237 kb on + strand, within PS417_06205at 1378.237 kb on + strand, within PS417_06205at 1378.237 kb on + strand, within PS417_06205at 1378.237 kb on + strand, within PS417_06205at 1378.237 kb on + strand, within PS417_06205at 1378.379 kb on + strandat 1378.379 kb on + strandat 1378.380 kb on - strandat 1378.538 kb on + strandat 1378.538 kb on + strandat 1378.549 kb on + strandat 1378.550 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
remove
1,376,592 + PS417_06200 0.66 +0.2
1,376,593 - +0.4
1,376,593 - PS417_06200 0.66 +1.4
1,376,721 + PS417_06200 0.71 -0.0
1,377,535 + -0.2
1,377,536 - +0.2
1,377,539 + -1.0
1,377,539 + +0.6
1,377,540 - -1.8
1,377,540 - +0.5
1,377,586 + +0.1
1,377,593 - +0.6
1,377,620 + +1.1
1,377,982 + PS417_06205 0.50 -0.5
1,377,982 + PS417_06205 0.50 +0.1
1,377,982 + PS417_06205 0.50 +0.4
1,377,982 + PS417_06205 0.50 -1.1
1,377,983 - PS417_06205 0.50 -1.1
1,377,983 - PS417_06205 0.50 -0.9
1,378,196 - PS417_06205 0.77 -1.2
1,378,224 + PS417_06205 0.80 -1.5
1,378,224 + PS417_06205 0.80 -0.3
1,378,233 + PS417_06205 0.81 +0.2
1,378,234 - PS417_06205 0.81 -2.1
1,378,235 + PS417_06205 0.82 -0.2
1,378,235 + PS417_06205 0.82 +0.5
1,378,235 + PS417_06205 0.82 +1.8
1,378,235 + PS417_06205 0.82 +0.2
1,378,236 - PS417_06205 0.82 -0.8
1,378,236 - PS417_06205 0.82 +1.2
1,378,236 - PS417_06205 0.82 -0.1
1,378,236 - PS417_06205 0.82 -0.7
1,378,236 - PS417_06205 0.82 -1.4
1,378,236 - PS417_06205 0.82 -0.4
1,378,237 + PS417_06205 0.82 -0.4
1,378,237 + PS417_06205 0.82 -0.8
1,378,237 + PS417_06205 0.82 -0.4
1,378,237 + PS417_06205 0.82 +0.3
1,378,237 + PS417_06205 0.82 -0.1
1,378,237 + PS417_06205 0.82 -0.2
1,378,379 + +0.1
1,378,379 + -1.2
1,378,380 - -1.2
1,378,538 + +0.4
1,378,538 + -0.1
1,378,549 + +1.3
1,378,550 - -0.2

Or see this region's nucleotide sequence