Experiment: 80% Methanol 2 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19025 and PS417_19030 are separated by 95 nucleotides PS417_19030 and PS417_19035 are separated by 52 nucleotides PS417_19035 and PS417_19040 are separated by 115 nucleotides
PS417_19025: PS417_19025 - aspartate aminotransferase, at 4,116,846 to 4,118,051
_19025
PS417_19030: PS417_19030 - sodium:dicarboxylate symporter, at 4,118,147 to 4,119,424
_19030
PS417_19035: PS417_19035 - heat-shock protein, at 4,119,477 to 4,119,935
_19035
PS417_19040: PS417_19040 - aspartate racemase, at 4,120,051 to 4,121,502
_19040
Position (kb)
4118
4119
4120 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4117.161 kb on + strand, within PS417_19025 at 4117.161 kb on + strand, within PS417_19025 at 4117.161 kb on + strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.390 kb on - strand at 4117.426 kb on + strand, within PS417_19025 at 4117.427 kb on - strand, within PS417_19025 at 4117.467 kb on + strand at 4117.569 kb on + strand, within PS417_19025 at 4117.655 kb on + strand, within PS417_19025 at 4117.655 kb on + strand, within PS417_19025 at 4117.701 kb on - strand, within PS417_19025 at 4117.741 kb on - strand, within PS417_19025 at 4117.821 kb on + strand, within PS417_19025 at 4117.821 kb on + strand, within PS417_19025 at 4117.822 kb on - strand, within PS417_19025 at 4117.822 kb on - strand, within PS417_19025 at 4117.822 kb on - strand, within PS417_19025 at 4117.822 kb on - strand, within PS417_19025 at 4117.905 kb on + strand, within PS417_19025 at 4118.103 kb on - strand at 4118.147 kb on - strand at 4118.285 kb on - strand, within PS417_19030 at 4118.843 kb on + strand, within PS417_19030 at 4118.843 kb on + strand, within PS417_19030 at 4118.844 kb on - strand, within PS417_19030 at 4118.844 kb on - strand, within PS417_19030 at 4118.866 kb on - strand at 4119.011 kb on + strand, within PS417_19030 at 4119.012 kb on - strand, within PS417_19030 at 4119.464 kb on + strand at 4119.926 kb on + strand at 4119.929 kb on + strand at 4119.930 kb on - strand at 4120.003 kb on + strand at 4120.004 kb on - strand at 4120.007 kb on + strand at 4120.065 kb on - strand at 4120.065 kb on - strand at 4120.093 kb on - strand at 4120.185 kb on + strand at 4120.299 kb on - strand, within PS417_19040
Per-strain Table
Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress remove 4,117,161 + PS417_19025 0.26 +0.5 4,117,161 + PS417_19025 0.26 +0.4 4,117,161 + PS417_19025 0.26 +0.1 4,117,162 - PS417_19025 0.26 -1.2 4,117,162 - PS417_19025 0.26 -0.3 4,117,162 - PS417_19025 0.26 -0.4 4,117,162 - PS417_19025 0.26 -0.1 4,117,162 - PS417_19025 0.26 -0.5 4,117,390 - -0.2 4,117,426 + PS417_19025 0.48 +0.5 4,117,427 - PS417_19025 0.48 -0.1 4,117,467 + +1.7 4,117,569 + PS417_19025 0.60 -0.4 4,117,655 + PS417_19025 0.67 -0.4 4,117,655 + PS417_19025 0.67 -1.2 4,117,701 - PS417_19025 0.71 -0.0 4,117,741 - PS417_19025 0.74 +0.3 4,117,821 + PS417_19025 0.81 -0.0 4,117,821 + PS417_19025 0.81 -0.1 4,117,822 - PS417_19025 0.81 +0.2 4,117,822 - PS417_19025 0.81 +0.4 4,117,822 - PS417_19025 0.81 -0.1 4,117,822 - PS417_19025 0.81 -0.9 4,117,905 + PS417_19025 0.88 +0.1 4,118,103 - +1.1 4,118,147 - -0.4 4,118,285 - PS417_19030 0.11 -0.0 4,118,843 + PS417_19030 0.54 +0.8 4,118,843 + PS417_19030 0.54 -0.5 4,118,844 - PS417_19030 0.55 +0.4 4,118,844 - PS417_19030 0.55 +4.2 4,118,866 - +0.8 4,119,011 + PS417_19030 0.68 +0.6 4,119,012 - PS417_19030 0.68 -0.4 4,119,464 + +0.3 4,119,926 + +1.0 4,119,929 + -1.0 4,119,930 - +0.5 4,120,003 + +1.0 4,120,004 - +0.1 4,120,007 + +0.2 4,120,065 - -1.9 4,120,065 - -0.8 4,120,093 - -0.3 4,120,185 + +0.3 4,120,299 - PS417_19040 0.17 +0.2
Or see this region's nucleotide sequence