Strain Fitness in Pseudomonas simiae WCS417 around PS417_15255

Experiment: 80% Methanol 2 mM; liquid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_15245 and PS417_15250 are separated by 333 nucleotidesPS417_15250 and PS417_15255 are separated by 4 nucleotidesPS417_15255 and PS417_15260 overlap by 4 nucleotidesPS417_15260 and PS417_15265 overlap by 4 nucleotides PS417_15245: PS417_15245 - PTS sugar transporter subunit IIC, at 3,342,887 to 3,344,962 _15245 PS417_15250: PS417_15250 - DNA repair protein, at 3,345,296 to 3,345,625 _15250 PS417_15255: PS417_15255 - serine/threonine protein kinase, at 3,345,630 to 3,346,475 _15255 PS417_15260: PS417_15260 - protein phosphatase, at 3,346,472 to 3,347,185 _15260 PS417_15265: PS417_15265 - type VI secretion protein VasK, at 3,347,182 to 3,350,517 _15265 Position (kb) 3345 3346 3347Strain fitness (log2 ratio) -1 0 1 2 3at 3344.648 kb on + strand, within PS417_15245at 3344.649 kb on - strand, within PS417_15245at 3344.649 kb on - strand, within PS417_15245at 3345.182 kb on + strandat 3345.201 kb on + strandat 3345.289 kb on + strandat 3345.564 kb on + strand, within PS417_15250at 3345.596 kb on + strandat 3345.646 kb on - strandat 3345.646 kb on - strandat 3345.646 kb on - strandat 3345.844 kb on + strand, within PS417_15255at 3345.845 kb on - strand, within PS417_15255at 3345.845 kb on - strand, within PS417_15255at 3346.178 kb on + strand, within PS417_15255at 3346.609 kb on - strand, within PS417_15260at 3346.664 kb on + strand, within PS417_15260at 3346.664 kb on + strand, within PS417_15260at 3346.665 kb on - strand, within PS417_15260at 3346.665 kb on - strand, within PS417_15260at 3346.803 kb on + strand, within PS417_15260at 3346.804 kb on - strand, within PS417_15260at 3346.895 kb on - strand, within PS417_15260at 3346.931 kb on + strand, within PS417_15260at 3346.931 kb on + strand, within PS417_15260at 3346.932 kb on - strand, within PS417_15260at 3347.065 kb on + strand, within PS417_15260at 3347.066 kb on - strand, within PS417_15260at 3347.262 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
remove
3,344,648 + PS417_15245 0.85 +0.1
3,344,649 - PS417_15245 0.85 +0.4
3,344,649 - PS417_15245 0.85 -0.1
3,345,182 + -0.4
3,345,201 + +1.3
3,345,289 + +0.1
3,345,564 + PS417_15250 0.81 -0.1
3,345,596 + +0.2
3,345,646 - +2.8
3,345,646 - +3.2
3,345,646 - +2.8
3,345,844 + PS417_15255 0.25 -0.1
3,345,845 - PS417_15255 0.25 +2.1
3,345,845 - PS417_15255 0.25 +2.1
3,346,178 + PS417_15255 0.65 +0.4
3,346,609 - PS417_15260 0.19 +1.4
3,346,664 + PS417_15260 0.27 -0.2
3,346,664 + PS417_15260 0.27 +0.4
3,346,665 - PS417_15260 0.27 +1.4
3,346,665 - PS417_15260 0.27 +0.9
3,346,803 + PS417_15260 0.46 -1.2
3,346,804 - PS417_15260 0.46 +1.0
3,346,895 - PS417_15260 0.59 +0.8
3,346,931 + PS417_15260 0.64 -0.3
3,346,931 + PS417_15260 0.64 +0.1
3,346,932 - PS417_15260 0.64 +0.4
3,347,065 + PS417_15260 0.83 -0.2
3,347,066 - PS417_15260 0.83 +0.6
3,347,262 - +0.9

Or see this region's nucleotide sequence