Strain Fitness in Pseudomonas simiae WCS417 around PS417_16720

Experiment: 80% Methanol 1 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16710 and PS417_16715 are separated by 18 nucleotidesPS417_16715 and PS417_16720 overlap by 4 nucleotidesPS417_16720 and PS417_16725 are separated by 129 nucleotidesPS417_16725 and PS417_16730 are separated by 137 nucleotides PS417_16710: PS417_16710 - hydrolase, at 3,646,680 to 3,647,441 _16710 PS417_16715: PS417_16715 - DoxX family protein, at 3,647,460 to 3,647,867 _16715 PS417_16720: PS417_16720 - membrane protein, at 3,647,864 to 3,648,136 _16720 PS417_16725: PS417_16725 - hypothetical protein, at 3,648,266 to 3,648,466 _16725 PS417_16730: PS417_16730 - peroxidase, at 3,648,604 to 3,649,464 _16730 Position (kb) 3647 3648 3649Strain fitness (log2 ratio) -2 -1 0 1at 3646.881 kb on + strand, within PS417_16710at 3647.269 kb on + strandat 3647.269 kb on + strand, within PS417_16710at 3647.435 kb on + strandat 3647.435 kb on + strandat 3647.435 kb on + strandat 3647.436 kb on - strandat 3647.436 kb on - strandat 3647.572 kb on + strand, within PS417_16715at 3647.709 kb on + strand, within PS417_16715at 3647.722 kb on + strand, within PS417_16715at 3647.955 kb on + strand, within PS417_16720at 3648.163 kb on + strandat 3648.275 kb on + strandat 3648.276 kb on - strandat 3648.312 kb on + strand, within PS417_16725at 3648.364 kb on - strandat 3648.367 kb on + strand, within PS417_16725at 3648.367 kb on + strand, within PS417_16725at 3648.367 kb on + strand, within PS417_16725at 3648.367 kb on + strand, within PS417_16725at 3648.368 kb on - strand, within PS417_16725at 3648.368 kb on - strand, within PS417_16725at 3648.368 kb on - strand, within PS417_16725at 3648.368 kb on - strand, within PS417_16725at 3648.368 kb on - strand, within PS417_16725at 3648.371 kb on + strand, within PS417_16725at 3648.372 kb on - strand, within PS417_16725at 3648.372 kb on - strand, within PS417_16725at 3648.373 kb on + strand, within PS417_16725at 3648.461 kb on - strandat 3648.581 kb on - strandat 3648.659 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 1 mM; liquid stress
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3,646,881 + PS417_16710 0.26 -0.2
3,647,269 + +0.5
3,647,269 + PS417_16710 0.77 -1.6
3,647,435 + -0.1
3,647,435 + +0.1
3,647,435 + -0.2
3,647,436 - -0.2
3,647,436 - +0.8
3,647,572 + PS417_16715 0.27 +0.7
3,647,709 + PS417_16715 0.61 -1.1
3,647,722 + PS417_16715 0.64 +0.4
3,647,955 + PS417_16720 0.33 +0.3
3,648,163 + -0.1
3,648,275 + -0.5
3,648,276 - +0.1
3,648,312 + PS417_16725 0.23 +1.3
3,648,364 - -0.5
3,648,367 + PS417_16725 0.50 -0.4
3,648,367 + PS417_16725 0.50 +0.2
3,648,367 + PS417_16725 0.50 -0.4
3,648,367 + PS417_16725 0.50 -0.5
3,648,368 - PS417_16725 0.51 -0.6
3,648,368 - PS417_16725 0.51 +1.4
3,648,368 - PS417_16725 0.51 +0.2
3,648,368 - PS417_16725 0.51 -0.4
3,648,368 - PS417_16725 0.51 +0.2
3,648,371 + PS417_16725 0.52 -0.4
3,648,372 - PS417_16725 0.53 -0.6
3,648,372 - PS417_16725 0.53 -0.0
3,648,373 + PS417_16725 0.53 -2.1
3,648,461 - -0.3
3,648,581 - +0.4
3,648,659 + -0.5

Or see this region's nucleotide sequence