Strain Fitness in Pseudomonas simiae WCS417 around PS417_17790

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17785 and PS417_17790 are separated by 316 nucleotidesPS417_17790 and PS417_17795 overlap by 1 nucleotidesPS417_17795 and PS417_17800 are separated by 8 nucleotides PS417_17785: PS417_17785 - 4-amino-4-deoxy-L-arabinose transferase, at 3,882,598 to 3,884,253 _17785 PS417_17790: PS417_17790 - ABC transporter, at 3,884,570 to 3,885,283 _17790 PS417_17795: PS417_17795 - ABC transporter permease, at 3,885,283 to 3,886,026 _17795 PS417_17800: PS417_17800 - microcin B17-processing protein McbD, at 3,886,035 to 3,887,228 _17800 Position (kb) 3884 3885 3886Strain fitness (log2 ratio) -1 0 1 2at 3883.584 kb on + strandat 3883.584 kb on + strand, within PS417_17785at 3883.585 kb on - strand, within PS417_17785at 3883.585 kb on - strand, within PS417_17785at 3883.585 kb on - strand, within PS417_17785at 3883.585 kb on - strand, within PS417_17785at 3883.684 kb on + strand, within PS417_17785at 3883.708 kb on + strand, within PS417_17785at 3884.017 kb on + strand, within PS417_17785at 3884.018 kb on - strand, within PS417_17785at 3884.018 kb on - strand, within PS417_17785at 3884.054 kb on - strand, within PS417_17785at 3884.066 kb on + strand, within PS417_17785at 3884.067 kb on - strand, within PS417_17785at 3884.138 kb on + strandat 3884.206 kb on + strandat 3884.209 kb on + strandat 3884.209 kb on + strandat 3884.210 kb on - strandat 3884.258 kb on + strandat 3884.322 kb on + strandat 3884.322 kb on + strandat 3884.397 kb on - strandat 3884.558 kb on + strandat 3884.559 kb on - strandat 3884.600 kb on - strandat 3884.618 kb on - strandat 3884.618 kb on - strandat 3884.628 kb on + strandat 3884.629 kb on - strandat 3884.688 kb on + strand, within PS417_17790at 3884.688 kb on + strand, within PS417_17790at 3884.688 kb on + strand, within PS417_17790at 3884.688 kb on + strandat 3884.689 kb on - strand, within PS417_17790at 3884.832 kb on - strand, within PS417_17790at 3884.893 kb on - strand, within PS417_17790at 3885.047 kb on + strand, within PS417_17790at 3885.048 kb on - strand, within PS417_17790at 3885.192 kb on - strand, within PS417_17790at 3885.223 kb on + strandat 3885.224 kb on - strandat 3885.573 kb on + strand, within PS417_17795at 3885.735 kb on + strand, within PS417_17795at 3885.853 kb on - strand, within PS417_17795

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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3,883,584 + -0.5
3,883,584 + PS417_17785 0.60 +1.0
3,883,585 - PS417_17785 0.60 +1.6
3,883,585 - PS417_17785 0.60 +1.5
3,883,585 - PS417_17785 0.60 +1.7
3,883,585 - PS417_17785 0.60 +2.1
3,883,684 + PS417_17785 0.66 +0.9
3,883,708 + PS417_17785 0.67 +1.2
3,884,017 + PS417_17785 0.86 +1.1
3,884,018 - PS417_17785 0.86 +1.7
3,884,018 - PS417_17785 0.86 +2.0
3,884,054 - PS417_17785 0.88 +1.8
3,884,066 + PS417_17785 0.89 +1.6
3,884,067 - PS417_17785 0.89 +1.5
3,884,138 + +1.6
3,884,206 + +1.2
3,884,209 + +1.9
3,884,209 + +1.2
3,884,210 - +1.1
3,884,258 + -0.2
3,884,322 + -1.1
3,884,322 + +0.1
3,884,397 - -0.2
3,884,558 + -0.3
3,884,559 - -0.3
3,884,600 - +1.9
3,884,618 - -0.3
3,884,618 - +0.2
3,884,628 + +0.7
3,884,629 - -0.3
3,884,688 + PS417_17790 0.17 +0.1
3,884,688 + PS417_17790 0.17 +0.2
3,884,688 + PS417_17790 0.17 +0.7
3,884,688 + -0.7
3,884,689 - PS417_17790 0.17 +0.8
3,884,832 - PS417_17790 0.37 -0.0
3,884,893 - PS417_17790 0.45 +0.2
3,885,047 + PS417_17790 0.67 +0.1
3,885,048 - PS417_17790 0.67 +0.6
3,885,192 - PS417_17790 0.87 +0.5
3,885,223 + -0.0
3,885,224 - -0.2
3,885,573 + PS417_17795 0.39 -0.2
3,885,735 + PS417_17795 0.61 -1.7
3,885,853 - PS417_17795 0.77 +0.7

Or see this region's nucleotide sequence