Strain Fitness in Pseudomonas simiae WCS417 around PS417_16980

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16970 and PS417_16975 are separated by 64 nucleotidesPS417_16975 and PS417_16980 are separated by 168 nucleotidesPS417_16980 and PS417_16985 are separated by 188 nucleotides PS417_16970: PS417_16970 - membrane protein, at 3,706,325 to 3,708,052 _16970 PS417_16975: PS417_16975 - GNAT family acetyltransferase, at 3,708,117 to 3,708,767 _16975 PS417_16980: PS417_16980 - exonuclease III, at 3,708,936 to 3,709,748 _16980 PS417_16985: PS417_16985 - membrane protein, at 3,709,937 to 3,711,268 _16985 Position (kb) 3708 3709 3710Strain fitness (log2 ratio) -2 -1 0 1 2at 3708.032 kb on - strandat 3708.065 kb on + strandat 3708.066 kb on - strandat 3708.115 kb on + strandat 3708.115 kb on + strandat 3708.116 kb on - strandat 3708.118 kb on + strandat 3708.118 kb on + strandat 3708.118 kb on + strandat 3708.135 kb on + strandat 3708.223 kb on + strand, within PS417_16975at 3708.223 kb on + strand, within PS417_16975at 3708.224 kb on - strand, within PS417_16975at 3708.224 kb on - strand, within PS417_16975at 3708.629 kb on - strand, within PS417_16975at 3708.689 kb on - strand, within PS417_16975at 3708.809 kb on + strandat 3708.822 kb on + strandat 3708.823 kb on - strandat 3708.850 kb on - strandat 3708.900 kb on + strandat 3709.076 kb on - strand, within PS417_16980at 3709.076 kb on - strand, within PS417_16980at 3709.101 kb on + strand, within PS417_16980at 3709.102 kb on - strand, within PS417_16980at 3709.102 kb on - strand, within PS417_16980at 3709.102 kb on - strand, within PS417_16980at 3709.209 kb on - strand, within PS417_16980at 3709.209 kb on - strandat 3709.323 kb on + strand, within PS417_16980at 3709.867 kb on - strandat 3709.875 kb on + strandat 3709.876 kb on - strandat 3709.876 kb on - strandat 3709.898 kb on - strandat 3709.979 kb on + strandat 3710.507 kb on + strand, within PS417_16985at 3710.507 kb on + strand, within PS417_16985at 3710.508 kb on - strand, within PS417_16985at 3710.508 kb on - strand, within PS417_16985at 3710.633 kb on - strand, within PS417_16985at 3710.646 kb on - strand, within PS417_16985

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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3,708,032 - +0.3
3,708,065 + +0.2
3,708,066 - -0.1
3,708,115 + -0.2
3,708,115 + -0.5
3,708,116 - -0.7
3,708,118 + -0.1
3,708,118 + -0.2
3,708,118 + +0.1
3,708,135 + +0.1
3,708,223 + PS417_16975 0.16 +0.6
3,708,223 + PS417_16975 0.16 -0.7
3,708,224 - PS417_16975 0.16 -1.5
3,708,224 - PS417_16975 0.16 +0.3
3,708,629 - PS417_16975 0.79 -0.5
3,708,689 - PS417_16975 0.88 +0.1
3,708,809 + -0.0
3,708,822 + -0.3
3,708,823 - -0.3
3,708,850 - -1.3
3,708,900 + -0.9
3,709,076 - PS417_16980 0.17 -2.4
3,709,076 - PS417_16980 0.17 -0.1
3,709,101 + PS417_16980 0.20 -1.6
3,709,102 - PS417_16980 0.20 -1.1
3,709,102 - PS417_16980 0.20 -0.8
3,709,102 - PS417_16980 0.20 -0.7
3,709,209 - PS417_16980 0.34 -1.6
3,709,209 - -0.5
3,709,323 + PS417_16980 0.48 -0.6
3,709,867 - +0.5
3,709,875 + +2.4
3,709,876 - +0.2
3,709,876 - +1.0
3,709,898 - -0.9
3,709,979 + -0.3
3,710,507 + PS417_16985 0.43 +0.1
3,710,507 + PS417_16985 0.43 -0.0
3,710,508 - PS417_16985 0.43 +1.9
3,710,508 - PS417_16985 0.43 -0.2
3,710,633 - PS417_16985 0.52 -0.5
3,710,646 - PS417_16985 0.53 -0.2

Or see this region's nucleotide sequence