Strain Fitness in Pseudomonas simiae WCS417 around PS417_01175

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01170 and PS417_01175 are separated by 117 nucleotidesPS417_01175 and PS417_01180 are separated by 140 nucleotides PS417_01170: PS417_01170 - chemotaxis protein CheY, at 258,394 to 259,134 _01170 PS417_01175: PS417_01175 - ATPase, at 259,252 to 260,565 _01175 PS417_01180: PS417_01180 - ribosomal protein S6 modification protein, at 260,706 to 261,611 _01180 Position (kb) 259 260 261Strain fitness (log2 ratio) -2 -1 0 1at 258.345 kb on + strandat 258.345 kb on + strandat 258.379 kb on + strandat 259.236 kb on + strandat 259.237 kb on - strandat 259.237 kb on - strandat 259.237 kb on - strandat 259.240 kb on + strandat 259.240 kb on + strandat 259.240 kb on + strandat 259.240 kb on + strandat 260.564 kb on - strandat 260.564 kb on - strandat 260.582 kb on + strandat 260.615 kb on + strandat 260.615 kb on + strandat 260.615 kb on + strandat 260.616 kb on - strandat 260.732 kb on + strandat 260.733 kb on - strandat 261.076 kb on + strand, within PS417_01180at 261.301 kb on - strand, within PS417_01180at 261.397 kb on + strand, within PS417_01180at 261.397 kb on + strand, within PS417_01180at 261.397 kb on + strand, within PS417_01180at 261.398 kb on - strand, within PS417_01180at 261.406 kb on - strand, within PS417_01180at 261.499 kb on + strand, within PS417_01180at 261.499 kb on + strand, within PS417_01180at 261.499 kb on + strand, within PS417_01180at 261.499 kb on + strand, within PS417_01180at 261.499 kb on + strand, within PS417_01180at 261.500 kb on - strand, within PS417_01180

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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258,345 + +0.3
258,345 + -0.6
258,379 + -1.0
259,236 + -0.3
259,237 - -2.0
259,237 - -1.5
259,237 - -0.7
259,240 + +0.3
259,240 + -0.1
259,240 + +0.3
259,240 + +0.4
260,564 - -0.2
260,564 - -0.3
260,582 + -0.4
260,615 + -0.3
260,615 + -0.2
260,615 + +0.4
260,616 - +0.2
260,732 + -0.5
260,733 - -1.1
261,076 + PS417_01180 0.41 -1.2
261,301 - PS417_01180 0.66 -0.6
261,397 + PS417_01180 0.76 -1.4
261,397 + PS417_01180 0.76 -1.1
261,397 + PS417_01180 0.76 -1.3
261,398 - PS417_01180 0.76 -0.2
261,406 - PS417_01180 0.77 -1.1
261,499 + PS417_01180 0.88 -0.1
261,499 + PS417_01180 0.88 -0.4
261,499 + PS417_01180 0.88 -0.8
261,499 + PS417_01180 0.88 -0.5
261,499 + PS417_01180 0.88 -0.5
261,500 - PS417_01180 0.88 -1.2

Or see this region's nucleotide sequence