Strain Fitness in Pseudomonas simiae WCS417 around PS417_10650

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10645 and PS417_10650 are separated by 16 nucleotidesPS417_10650 and PS417_10655 are separated by 298 nucleotidesPS417_10655 and PS417_10660 are separated by 1 nucleotides PS417_10645: PS417_10645 - magnesium ABC transporter ATPase, at 2,270,826 to 2,273,531 _10645 PS417_10650: PS417_10650 - methyltransferase, at 2,273,548 to 2,274,264 _10650 PS417_10655: PS417_10655 - LuxR family transcriptional regulator, at 2,274,563 to 2,275,189 _10655 PS417_10660: PS417_10660 - histidine kinase, at 2,275,191 to 2,278,805 _10660 Position (kb) 2273 2274 2275Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2272.926 kb on + strand, within PS417_10645at 2273.043 kb on + strand, within PS417_10645at 2273.043 kb on + strand, within PS417_10645at 2273.199 kb on + strand, within PS417_10645at 2273.199 kb on + strand, within PS417_10645at 2273.200 kb on - strandat 2273.200 kb on - strand, within PS417_10645at 2273.410 kb on - strandat 2273.439 kb on + strandat 2273.446 kb on + strandat 2273.472 kb on + strandat 2273.472 kb on + strandat 2273.473 kb on - strandat 2273.505 kb on + strandat 2273.505 kb on + strandat 2273.505 kb on + strandat 2273.505 kb on + strandat 2273.505 kb on + strandat 2273.505 kb on + strandat 2273.505 kb on + strandat 2273.506 kb on - strandat 2273.513 kb on + strandat 2273.530 kb on - strandat 2273.547 kb on + strandat 2273.547 kb on + strandat 2273.548 kb on - strandat 2273.548 kb on - strandat 2273.767 kb on + strand, within PS417_10650at 2274.308 kb on - strandat 2274.341 kb on + strandat 2274.357 kb on - strandat 2274.417 kb on + strandat 2274.417 kb on + strandat 2274.431 kb on + strandat 2274.450 kb on + strandat 2274.450 kb on + strandat 2274.451 kb on - strandat 2274.451 kb on - strandat 2274.451 kb on - strandat 2274.454 kb on - strandat 2274.459 kb on + strandat 2274.460 kb on - strandat 2274.460 kb on - strandat 2274.513 kb on + strandat 2274.513 kb on + strandat 2274.517 kb on + strandat 2274.518 kb on - strandat 2274.518 kb on - strandat 2274.518 kb on - strandat 2274.518 kb on - strandat 2274.531 kb on + strandat 2274.535 kb on + strandat 2274.535 kb on + strandat 2274.535 kb on + strandat 2274.535 kb on + strandat 2274.535 kb on + strandat 2274.535 kb on + strandat 2274.536 kb on - strandat 2274.541 kb on + strandat 2274.541 kb on + strandat 2274.562 kb on + strandat 2274.576 kb on + strandat 2274.576 kb on + strandat 2274.599 kb on - strandat 2274.617 kb on + strandat 2274.618 kb on - strandat 2275.057 kb on + strand, within PS417_10655at 2275.075 kb on + strand, within PS417_10655at 2275.106 kb on + strand, within PS417_10655at 2275.107 kb on - strand, within PS417_10655

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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2,272,926 + PS417_10645 0.78 -2.8
2,273,043 + PS417_10645 0.82 -1.5
2,273,043 + PS417_10645 0.82 -3.9
2,273,199 + PS417_10645 0.88 -2.9
2,273,199 + PS417_10645 0.88 -2.6
2,273,200 - -0.8
2,273,200 - PS417_10645 0.88 -6.4
2,273,410 - -3.5
2,273,439 + -2.1
2,273,446 + -0.6
2,273,472 + -3.3
2,273,472 + -1.9
2,273,473 - -2.3
2,273,505 + -2.1
2,273,505 + +0.1
2,273,505 + -1.3
2,273,505 + -1.2
2,273,505 + -3.8
2,273,505 + -3.7
2,273,505 + +0.2
2,273,506 - -6.6
2,273,513 + -3.9
2,273,530 - -3.2
2,273,547 + -1.7
2,273,547 + -2.4
2,273,548 - -4.5
2,273,548 - -3.9
2,273,767 + PS417_10650 0.31 -3.3
2,274,308 - -1.3
2,274,341 + -0.5
2,274,357 - -0.3
2,274,417 + -0.4
2,274,417 + -0.8
2,274,431 + -1.4
2,274,450 + +1.1
2,274,450 + +0.0
2,274,451 - -0.8
2,274,451 - +0.4
2,274,451 - +0.0
2,274,454 - -1.4
2,274,459 + -0.5
2,274,460 - +0.4
2,274,460 - -0.2
2,274,513 + -0.2
2,274,513 + -0.9
2,274,517 + +0.3
2,274,518 - -0.4
2,274,518 - -0.2
2,274,518 - +0.2
2,274,518 - -0.3
2,274,531 + -0.1
2,274,535 + -0.5
2,274,535 + +0.7
2,274,535 + -0.6
2,274,535 + -1.2
2,274,535 + +1.3
2,274,535 + -0.2
2,274,536 - +0.3
2,274,541 + +0.3
2,274,541 + -0.8
2,274,562 + -1.6
2,274,576 + -0.3
2,274,576 + +0.1
2,274,599 - -0.4
2,274,617 + +0.1
2,274,618 - -0.0
2,275,057 + PS417_10655 0.79 +0.4
2,275,075 + PS417_10655 0.82 -0.4
2,275,106 + PS417_10655 0.87 -0.8
2,275,107 - PS417_10655 0.87 -0.1

Or see this region's nucleotide sequence