Strain Fitness in Pseudomonas simiae WCS417 around PS417_09610

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09605 and PS417_09610 are separated by 8 nucleotidesPS417_09610 and PS417_09615 overlap by 11 nucleotides PS417_09605: PS417_09605 - glycosyl transferase, at 2,080,202 to 2,081,419 _09605 PS417_09610: PS417_09610 - beta-xylosidase, at 2,081,428 to 2,082,756 _09610 PS417_09615: PS417_09615 - glycosyl transferase family 1, at 2,082,746 to 2,083,936 _09615 Position (kb) 2081 2082 2083Strain fitness (log2 ratio) -2 -1 0 1at 2080.974 kb on + strand, within PS417_09605at 2080.975 kb on - strand, within PS417_09605at 2081.523 kb on - strandat 2081.753 kb on + strand, within PS417_09610at 2081.910 kb on + strand, within PS417_09610at 2081.912 kb on + strand, within PS417_09610at 2081.912 kb on + strand, within PS417_09610at 2081.913 kb on - strandat 2081.913 kb on - strand, within PS417_09610at 2081.913 kb on - strand, within PS417_09610at 2082.394 kb on - strand, within PS417_09610at 2082.413 kb on - strand, within PS417_09610at 2082.416 kb on + strand, within PS417_09610at 2082.655 kb on + strandat 2082.655 kb on + strandat 2082.655 kb on + strandat 2082.656 kb on - strandat 2082.893 kb on + strand, within PS417_09615at 2082.894 kb on - strand, within PS417_09615at 2083.204 kb on - strand, within PS417_09615at 2083.204 kb on - strand, within PS417_09615at 2083.345 kb on + strand, within PS417_09615at 2083.357 kb on - strand, within PS417_09615

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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2,080,974 + PS417_09605 0.63 -0.5
2,080,975 - PS417_09605 0.63 -0.2
2,081,523 - -0.7
2,081,753 + PS417_09610 0.24 +0.1
2,081,910 + PS417_09610 0.36 -1.3
2,081,912 + PS417_09610 0.36 -1.4
2,081,912 + PS417_09610 0.36 -1.8
2,081,913 - +1.6
2,081,913 - PS417_09610 0.36 -0.5
2,081,913 - PS417_09610 0.36 +1.0
2,082,394 - PS417_09610 0.73 -0.0
2,082,413 - PS417_09610 0.74 -0.2
2,082,416 + PS417_09610 0.74 +0.1
2,082,655 + -1.0
2,082,655 + -0.1
2,082,655 + -1.2
2,082,656 - -0.3
2,082,893 + PS417_09615 0.12 -1.1
2,082,894 - PS417_09615 0.12 -1.3
2,083,204 - PS417_09615 0.38 -1.0
2,083,204 - PS417_09615 0.38 -1.9
2,083,345 + PS417_09615 0.50 -0.3
2,083,357 - PS417_09615 0.51 -1.5

Or see this region's nucleotide sequence