Strain Fitness in Pseudomonas simiae WCS417 around PS417_28070

Experiment: Fraxetin 2 mM; solid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_28065 and PS417_28070 are separated by 70 nucleotidesPS417_28070 and PS417_28075 are separated by 205 nucleotides PS417_28065: PS417_28065 - transcriptional regulator PhoU, at 6,055,542 to 6,056,303 _28065 PS417_28070: PS417_28070 - phosphate ABC transporter ATP-binding protein, at 6,056,374 to 6,057,207 _28070 PS417_28075: PS417_28075 - phosphate ABC transporter permease, at 6,057,413 to 6,059,083 _28075 Position (kb) 6056 6057 6058Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 6055.388 kb on - strandat 6055.388 kb on - strandat 6055.391 kb on - strandat 6055.459 kb on + strandat 6055.459 kb on + strandat 6055.543 kb on + strandat 6055.543 kb on + strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.547 kb on + strandat 6055.548 kb on - strandat 6055.577 kb on + strandat 6055.654 kb on + strand, within PS417_28065at 6055.655 kb on - strand, within PS417_28065at 6056.327 kb on + strandat 6056.396 kb on + strandat 6056.396 kb on + strandat 6056.397 kb on - strandat 6056.397 kb on - strandat 6056.471 kb on + strand, within PS417_28070at 6056.471 kb on + strand, within PS417_28070at 6056.471 kb on + strand, within PS417_28070at 6056.472 kb on - strand, within PS417_28070at 6056.472 kb on - strand, within PS417_28070at 6056.472 kb on - strand, within PS417_28070at 6056.472 kb on - strand, within PS417_28070at 6056.472 kb on - strand, within PS417_28070at 6056.472 kb on - strand, within PS417_28070at 6056.825 kb on + strand, within PS417_28070at 6056.826 kb on - strand, within PS417_28070at 6056.925 kb on - strand, within PS417_28070at 6057.089 kb on + strand, within PS417_28070at 6057.224 kb on + strandat 6057.414 kb on + strandat 6057.430 kb on + strandat 6057.431 kb on - strandat 6057.516 kb on + strandat 6057.567 kb on + strandat 6057.567 kb on + strandat 6057.567 kb on + strandat 6057.567 kb on + strandat 6057.571 kb on + strandat 6057.572 kb on - strandat 6057.807 kb on - strand, within PS417_28075at 6057.973 kb on - strand, within PS417_28075at 6057.973 kb on - strand, within PS417_28075at 6058.077 kb on + strand, within PS417_28075at 6058.089 kb on + strand, within PS417_28075at 6058.090 kb on - strand, within PS417_28075

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
remove
6,055,388 - +0.9
6,055,388 - +1.2
6,055,391 - +0.5
6,055,459 + +0.7
6,055,459 + -1.2
6,055,543 + -0.0
6,055,543 + -0.3
6,055,544 - +0.0
6,055,544 - +0.2
6,055,544 - +0.0
6,055,544 - +0.4
6,055,544 - +0.9
6,055,544 - +0.2
6,055,544 - -1.0
6,055,544 - +0.2
6,055,547 + +0.8
6,055,548 - -0.1
6,055,577 + -1.8
6,055,654 + PS417_28065 0.15 -2.5
6,055,655 - PS417_28065 0.15 -1.4
6,056,327 + -2.3
6,056,396 + -2.3
6,056,396 + -2.1
6,056,397 - -4.1
6,056,397 - -6.3
6,056,471 + PS417_28070 0.12 -5.8
6,056,471 + PS417_28070 0.12 -5.7
6,056,471 + PS417_28070 0.12 -4.0
6,056,472 - PS417_28070 0.12 -3.0
6,056,472 - PS417_28070 0.12 -5.4
6,056,472 - PS417_28070 0.12 -3.4
6,056,472 - PS417_28070 0.12 -2.8
6,056,472 - PS417_28070 0.12 -2.0
6,056,472 - PS417_28070 0.12 -5.8
6,056,825 + PS417_28070 0.54 -5.4
6,056,826 - PS417_28070 0.54 -5.2
6,056,925 - PS417_28070 0.66 -4.3
6,057,089 + PS417_28070 0.86 -4.2
6,057,224 + -3.3
6,057,414 + -1.2
6,057,430 + -0.5
6,057,431 - -1.0
6,057,516 + -0.9
6,057,567 + -3.5
6,057,567 + -3.3
6,057,567 + -0.6
6,057,567 + -3.1
6,057,571 + -1.8
6,057,572 - -1.9
6,057,807 - PS417_28075 0.24 -2.9
6,057,973 - PS417_28075 0.34 -2.4
6,057,973 - PS417_28075 0.34 -2.7
6,058,077 + PS417_28075 0.40 -4.4
6,058,089 + PS417_28075 0.40 -6.3
6,058,090 - PS417_28075 0.41 -1.5

Or see this region's nucleotide sequence