Strain Fitness in Pseudomonas simiae WCS417 around PS417_22735

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22725 and PS417_22730 are separated by 133 nucleotidesPS417_22730 and PS417_22735 are separated by 139 nucleotidesPS417_22735 and PS417_22740 are separated by 31 nucleotides PS417_22725: PS417_22725 - chemotaxis protein, at 4,922,230 to 4,924,368 _22725 PS417_22730: PS417_22730 - nitroreductase, at 4,924,502 to 4,925,065 _22730 PS417_22735: PS417_22735 - thiol oxidoreductase, at 4,925,205 to 4,926,632 _22735 PS417_22740: PS417_22740 - imelysin, at 4,926,664 to 4,927,728 _22740 Position (kb) 4925 4926 4927Strain fitness (log2 ratio) -3 -2 -1 0 1at 4924.482 kb on + strandat 4924.482 kb on + strandat 4924.483 kb on - strandat 4924.483 kb on - strandat 4924.546 kb on + strandat 4925.283 kb on - strandat 4925.283 kb on - strandat 4925.411 kb on + strand, within PS417_22735at 4925.510 kb on + strand, within PS417_22735at 4925.552 kb on + strand, within PS417_22735at 4925.553 kb on - strand, within PS417_22735at 4925.553 kb on - strand, within PS417_22735at 4925.553 kb on - strand, within PS417_22735at 4925.713 kb on - strand, within PS417_22735at 4925.713 kb on - strand, within PS417_22735at 4925.713 kb on - strand, within PS417_22735at 4925.885 kb on + strand, within PS417_22735at 4925.886 kb on - strand, within PS417_22735at 4925.886 kb on - strand, within PS417_22735at 4926.051 kb on - strand, within PS417_22735at 4926.186 kb on + strand, within PS417_22735at 4926.186 kb on + strand, within PS417_22735at 4926.186 kb on + strand, within PS417_22735at 4926.186 kb on + strand, within PS417_22735at 4926.261 kb on + strand, within PS417_22735at 4926.261 kb on + strand, within PS417_22735at 4926.628 kb on + strandat 4926.628 kb on + strandat 4926.629 kb on - strandat 4926.630 kb on + strandat 4926.630 kb on + strandat 4926.630 kb on + strandat 4926.631 kb on - strandat 4926.646 kb on + strandat 4926.784 kb on + strand, within PS417_22740at 4926.959 kb on + strand, within PS417_22740at 4926.959 kb on + strand, within PS417_22740at 4926.960 kb on - strand, within PS417_22740at 4926.960 kb on - strand, within PS417_22740at 4927.090 kb on + strand, within PS417_22740at 4927.091 kb on - strand, within PS417_22740at 4927.091 kb on - strand, within PS417_22740at 4927.091 kb on - strand, within PS417_22740at 4927.296 kb on - strand, within PS417_22740at 4927.296 kb on - strand, within PS417_22740at 4927.540 kb on + strand, within PS417_22740at 4927.541 kb on - strand, within PS417_22740at 4927.630 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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4,924,482 + +0.0
4,924,482 + -0.0
4,924,483 - +0.1
4,924,483 - +0.5
4,924,546 + +0.5
4,925,283 - +0.3
4,925,283 - -1.6
4,925,411 + PS417_22735 0.14 +0.3
4,925,510 + PS417_22735 0.21 -2.3
4,925,552 + PS417_22735 0.24 +0.7
4,925,553 - PS417_22735 0.24 -2.0
4,925,553 - PS417_22735 0.24 -1.6
4,925,553 - PS417_22735 0.24 -2.2
4,925,713 - PS417_22735 0.36 -1.3
4,925,713 - PS417_22735 0.36 -0.6
4,925,713 - PS417_22735 0.36 -0.6
4,925,885 + PS417_22735 0.48 -1.7
4,925,886 - PS417_22735 0.48 -1.1
4,925,886 - PS417_22735 0.48 -2.8
4,926,051 - PS417_22735 0.59 -1.7
4,926,186 + PS417_22735 0.69 +0.6
4,926,186 + PS417_22735 0.69 -0.9
4,926,186 + PS417_22735 0.69 -2.2
4,926,186 + PS417_22735 0.69 -0.4
4,926,261 + PS417_22735 0.74 -2.7
4,926,261 + PS417_22735 0.74 -2.4
4,926,628 + -1.4
4,926,628 + -2.1
4,926,629 - -2.4
4,926,630 + -0.3
4,926,630 + +0.3
4,926,630 + +0.4
4,926,631 - +0.0
4,926,646 + +0.3
4,926,784 + PS417_22740 0.11 -2.0
4,926,959 + PS417_22740 0.28 -1.5
4,926,959 + PS417_22740 0.28 +0.2
4,926,960 - PS417_22740 0.28 -0.7
4,926,960 - PS417_22740 0.28 -1.3
4,927,090 + PS417_22740 0.40 -1.9
4,927,091 - PS417_22740 0.40 -1.8
4,927,091 - PS417_22740 0.40 -1.5
4,927,091 - PS417_22740 0.40 -1.6
4,927,296 - PS417_22740 0.59 -1.3
4,927,296 - PS417_22740 0.59 -0.9
4,927,540 + PS417_22740 0.82 -2.1
4,927,541 - PS417_22740 0.82 -1.4
4,927,630 - -1.3

Or see this region's nucleotide sequence