Strain Fitness in Pseudomonas simiae WCS417 around PS417_00650

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00640 and PS417_00645 are separated by 99 nucleotidesPS417_00645 and PS417_00650 are separated by 52 nucleotidesPS417_00650 and PS417_00655 are separated by 102 nucleotides PS417_00640: PS417_00640 - ABC transporter permease, at 131,045 to 131,893 _00640 PS417_00645: PS417_00645 - hypothetical protein, at 131,993 to 132,619 _00645 PS417_00650: PS417_00650 - LysR family transcriptional regulator, at 132,672 to 133,592 _00650 PS417_00655: PS417_00655 - DSBA oxidoreductase, at 133,695 to 135,230 _00655 Position (kb) 132 133 134Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 131.747 kb on + strand, within PS417_00640at 131.747 kb on + strand, within PS417_00640at 131.748 kb on - strand, within PS417_00640at 131.748 kb on - strand, within PS417_00640at 131.748 kb on - strand, within PS417_00640at 131.774 kb on + strand, within PS417_00640at 131.774 kb on + strand, within PS417_00640at 131.775 kb on - strand, within PS417_00640at 131.775 kb on - strand, within PS417_00640at 131.775 kb on - strand, within PS417_00640at 131.987 kb on - strandat 132.024 kb on + strandat 132.024 kb on + strandat 132.136 kb on + strand, within PS417_00645at 132.136 kb on + strand, within PS417_00645at 132.152 kb on - strand, within PS417_00645at 132.290 kb on - strand, within PS417_00645at 132.353 kb on + strand, within PS417_00645at 132.353 kb on + strand, within PS417_00645at 132.353 kb on + strand, within PS417_00645at 132.354 kb on - strand, within PS417_00645at 132.482 kb on - strand, within PS417_00645at 132.550 kb on + strand, within PS417_00645at 132.550 kb on + strand, within PS417_00645at 132.579 kb on - strandat 132.588 kb on - strandat 132.618 kb on - strandat 133.242 kb on + strand, within PS417_00650at 133.612 kb on + strandat 133.613 kb on - strandat 133.669 kb on + strandat 133.760 kb on - strandat 133.760 kb on - strandat 133.872 kb on + strand, within PS417_00655at 133.872 kb on + strand, within PS417_00655at 133.873 kb on - strand, within PS417_00655at 133.876 kb on + strand, within PS417_00655at 133.877 kb on - strand, within PS417_00655at 133.877 kb on - strand, within PS417_00655at 133.877 kb on - strand, within PS417_00655at 133.877 kb on - strand, within PS417_00655at 134.044 kb on - strand, within PS417_00655at 134.044 kb on - strand, within PS417_00655at 134.152 kb on - strand, within PS417_00655at 134.218 kb on + strand, within PS417_00655at 134.229 kb on + strand, within PS417_00655at 134.230 kb on - strand, within PS417_00655

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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131,747 + PS417_00640 0.83 -0.2
131,747 + PS417_00640 0.83 -0.0
131,748 - PS417_00640 0.83 -0.1
131,748 - PS417_00640 0.83 -0.1
131,748 - PS417_00640 0.83 -1.2
131,774 + PS417_00640 0.86 +0.5
131,774 + PS417_00640 0.86 -0.3
131,775 - PS417_00640 0.86 +0.2
131,775 - PS417_00640 0.86 -0.2
131,775 - PS417_00640 0.86 +0.4
131,987 - +1.5
132,024 + +0.1
132,024 + -0.3
132,136 + PS417_00645 0.23 -1.0
132,136 + PS417_00645 0.23 -0.3
132,152 - PS417_00645 0.25 -0.2
132,290 - PS417_00645 0.47 -1.1
132,353 + PS417_00645 0.57 +0.3
132,353 + PS417_00645 0.57 +0.3
132,353 + PS417_00645 0.57 +0.3
132,354 - PS417_00645 0.58 -0.4
132,482 - PS417_00645 0.78 +1.6
132,550 + PS417_00645 0.89 +0.6
132,550 + PS417_00645 0.89 +0.1
132,579 - -0.7
132,588 - +1.9
132,618 - +0.6
133,242 + PS417_00650 0.62 -3.8
133,612 + -3.4
133,613 - -2.7
133,669 + -1.9
133,760 - -3.5
133,760 - -3.5
133,872 + PS417_00655 0.12 -0.7
133,872 + PS417_00655 0.12 -1.1
133,873 - PS417_00655 0.12 -2.7
133,876 + PS417_00655 0.12 -1.4
133,877 - PS417_00655 0.12 -2.9
133,877 - PS417_00655 0.12 -2.7
133,877 - PS417_00655 0.12 -4.8
133,877 - PS417_00655 0.12 -3.9
134,044 - PS417_00655 0.23 -2.1
134,044 - PS417_00655 0.23 -3.8
134,152 - PS417_00655 0.30 -0.1
134,218 + PS417_00655 0.34 -2.1
134,229 + PS417_00655 0.35 -3.9
134,230 - PS417_00655 0.35 -1.7

Or see this region's nucleotide sequence