Experiment: Fraxetin 1 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21230 and PS417_21235 are separated by 132 nucleotides PS417_21235 and PS417_21240 overlap by 4 nucleotides PS417_21240 and PS417_21245 are separated by 4 nucleotides
PS417_21230: PS417_21230 - cytochrome C, at 4,616,948 to 4,617,751
_21230
PS417_21235: PS417_21235 - transglutaminase, at 4,617,884 to 4,618,687
_21235
PS417_21240: PS417_21240 - hypothetical protein, at 4,618,684 to 4,619,634
_21240
PS417_21245: PS417_21245 - hypothetical protein, at 4,619,639 to 4,621,048
_21245
Position (kb)
4617
4618
4619 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4617.118 kb on + strand, within PS417_21230 at 4617.119 kb on - strand, within PS417_21230 at 4617.119 kb on - strand, within PS417_21230 at 4617.329 kb on + strand, within PS417_21230 at 4617.329 kb on + strand, within PS417_21230 at 4617.330 kb on - strand, within PS417_21230 at 4617.572 kb on + strand, within PS417_21230 at 4617.614 kb on + strand, within PS417_21230 at 4617.615 kb on - strand, within PS417_21230 at 4617.615 kb on - strand at 4617.615 kb on - strand, within PS417_21230 at 4617.716 kb on + strand at 4617.717 kb on - strand at 4617.749 kb on + strand at 4617.750 kb on - strand at 4617.833 kb on - strand at 4617.993 kb on + strand, within PS417_21235 at 4618.062 kb on + strand, within PS417_21235 at 4618.063 kb on - strand, within PS417_21235 at 4618.129 kb on - strand, within PS417_21235 at 4618.146 kb on + strand, within PS417_21235 at 4618.272 kb on + strand, within PS417_21235 at 4618.273 kb on - strand, within PS417_21235 at 4618.621 kb on - strand at 4618.621 kb on - strand at 4618.656 kb on + strand at 4618.656 kb on + strand at 4618.657 kb on - strand at 4618.709 kb on + strand at 4618.709 kb on + strand at 4618.709 kb on + strand at 4618.709 kb on + strand at 4618.709 kb on + strand at 4618.709 kb on + strand at 4618.710 kb on - strand at 4618.710 kb on - strand at 4618.710 kb on - strand at 4618.973 kb on + strand, within PS417_21240 at 4618.985 kb on + strand, within PS417_21240 at 4619.030 kb on + strand, within PS417_21240 at 4619.033 kb on + strand, within PS417_21240 at 4619.033 kb on + strand, within PS417_21240 at 4619.034 kb on - strand, within PS417_21240 at 4619.183 kb on + strand, within PS417_21240 at 4619.218 kb on + strand, within PS417_21240 at 4619.375 kb on + strand, within PS417_21240 at 4619.375 kb on + strand, within PS417_21240 at 4619.375 kb on + strand, within PS417_21240 at 4619.375 kb on + strand, within PS417_21240 at 4619.376 kb on - strand, within PS417_21240 at 4619.546 kb on + strand at 4619.547 kb on - strand at 4619.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress remove 4,617,118 + PS417_21230 0.21 +0.5 4,617,119 - PS417_21230 0.21 +0.3 4,617,119 - PS417_21230 0.21 -0.7 4,617,329 + PS417_21230 0.47 -0.5 4,617,329 + PS417_21230 0.47 -0.5 4,617,330 - PS417_21230 0.48 -0.7 4,617,572 + PS417_21230 0.78 -1.3 4,617,614 + PS417_21230 0.83 +0.7 4,617,615 - PS417_21230 0.83 -0.2 4,617,615 - +2.1 4,617,615 - PS417_21230 0.83 -0.7 4,617,716 + -0.7 4,617,717 - -0.1 4,617,749 + +0.1 4,617,750 - +0.2 4,617,833 - -0.0 4,617,993 + PS417_21235 0.14 -0.3 4,618,062 + PS417_21235 0.22 -1.6 4,618,063 - PS417_21235 0.22 -0.4 4,618,129 - PS417_21235 0.30 -0.7 4,618,146 + PS417_21235 0.33 -0.4 4,618,272 + PS417_21235 0.48 -1.1 4,618,273 - PS417_21235 0.48 -0.3 4,618,621 - -0.1 4,618,621 - -1.9 4,618,656 + -0.4 4,618,656 + +0.0 4,618,657 - -0.3 4,618,709 + -0.2 4,618,709 + +1.2 4,618,709 + +1.3 4,618,709 + -1.1 4,618,709 + -0.5 4,618,709 + +0.2 4,618,710 - -0.6 4,618,710 - -0.3 4,618,710 - -0.1 4,618,973 + PS417_21240 0.30 +0.5 4,618,985 + PS417_21240 0.32 +1.3 4,619,030 + PS417_21240 0.36 -0.2 4,619,033 + PS417_21240 0.37 -0.1 4,619,033 + PS417_21240 0.37 -0.0 4,619,034 - PS417_21240 0.37 -0.4 4,619,183 + PS417_21240 0.52 -0.1 4,619,218 + PS417_21240 0.56 -0.4 4,619,375 + PS417_21240 0.73 +1.8 4,619,375 + PS417_21240 0.73 +1.0 4,619,375 + PS417_21240 0.73 +0.8 4,619,375 + PS417_21240 0.73 -0.6 4,619,376 - PS417_21240 0.73 -0.4 4,619,546 + -0.5 4,619,547 - -0.3 4,619,626 - +1.3
Or see this region's nucleotide sequence