Strain Fitness in Pseudomonas simiae WCS417 around PS417_12430

Experiment: Fraxetin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12420 and PS417_12425 are separated by 101 nucleotidesPS417_12425 and PS417_12430 are separated by 145 nucleotidesPS417_12430 and PS417_12435 are separated by 111 nucleotides PS417_12420: PS417_12420 - GNAT family acetyltransferase, at 2,701,150 to 2,701,641 _12420 PS417_12425: PS417_12425 - hypothetical protein, at 2,701,743 to 2,701,964 _12425 PS417_12430: PS417_12430 - TonB-dependent receptor, at 2,702,110 to 2,704,338 _12430 PS417_12435: PS417_12435 - hypothetical protein, at 2,704,450 to 2,706,201 _12435 Position (kb) 2702 2703 2704 2705Strain fitness (log2 ratio) -2 -1 0 1at 2701.129 kb on + strandat 2701.130 kb on - strandat 2701.130 kb on - strandat 2701.186 kb on + strandat 2701.188 kb on + strandat 2701.189 kb on - strandat 2701.970 kb on + strandat 2701.980 kb on - strandat 2702.045 kb on - strandat 2702.159 kb on + strandat 2702.207 kb on - strandat 2702.280 kb on - strandat 2702.280 kb on - strandat 2702.280 kb on - strandat 2702.395 kb on + strand, within PS417_12430at 2702.395 kb on + strand, within PS417_12430at 2702.396 kb on - strand, within PS417_12430at 2702.507 kb on + strand, within PS417_12430at 2702.507 kb on + strand, within PS417_12430at 2702.507 kb on + strand, within PS417_12430at 2702.508 kb on - strandat 2702.508 kb on - strandat 2702.508 kb on - strand, within PS417_12430at 2702.508 kb on - strand, within PS417_12430at 2702.590 kb on - strand, within PS417_12430at 2702.604 kb on - strand, within PS417_12430at 2702.766 kb on - strand, within PS417_12430at 2702.813 kb on + strand, within PS417_12430at 2702.813 kb on + strand, within PS417_12430at 2702.822 kb on + strand, within PS417_12430at 2702.822 kb on + strand, within PS417_12430at 2702.832 kb on - strand, within PS417_12430at 2702.832 kb on - strand, within PS417_12430at 2702.832 kb on - strand, within PS417_12430at 2702.855 kb on - strand, within PS417_12430at 2702.855 kb on - strand, within PS417_12430at 2702.934 kb on - strand, within PS417_12430at 2703.075 kb on + strand, within PS417_12430at 2703.131 kb on + strand, within PS417_12430at 2703.230 kb on + strand, within PS417_12430at 2703.230 kb on + strand, within PS417_12430at 2703.230 kb on + strand, within PS417_12430at 2703.231 kb on - strandat 2703.342 kb on - strand, within PS417_12430at 2703.344 kb on + strand, within PS417_12430at 2703.650 kb on + strand, within PS417_12430at 2703.650 kb on + strand, within PS417_12430at 2703.651 kb on - strand, within PS417_12430at 2703.651 kb on - strand, within PS417_12430at 2703.651 kb on - strand, within PS417_12430at 2703.743 kb on + strand, within PS417_12430at 2703.750 kb on - strand, within PS417_12430at 2703.750 kb on - strand, within PS417_12430at 2703.752 kb on + strand, within PS417_12430at 2703.752 kb on + strand, within PS417_12430at 2703.753 kb on - strand, within PS417_12430at 2703.753 kb on - strand, within PS417_12430at 2703.753 kb on - strand, within PS417_12430at 2703.753 kb on - strand, within PS417_12430at 2703.896 kb on + strand, within PS417_12430at 2703.936 kb on + strand, within PS417_12430at 2703.937 kb on - strand, within PS417_12430at 2704.059 kb on + strand, within PS417_12430at 2704.060 kb on - strand, within PS417_12430at 2704.324 kb on - strandat 2704.468 kb on + strandat 2704.468 kb on + strandat 2704.469 kb on - strandat 2704.469 kb on - strandat 2704.730 kb on + strand, within PS417_12435at 2704.731 kb on - strand, within PS417_12435at 2704.751 kb on + strand, within PS417_12435at 2704.751 kb on + strand, within PS417_12435at 2704.838 kb on + strand, within PS417_12435at 2704.839 kb on - strand, within PS417_12435at 2704.839 kb on - strand, within PS417_12435at 2704.908 kb on - strand, within PS417_12435at 2704.926 kb on - strand, within PS417_12435at 2704.926 kb on - strand, within PS417_12435at 2704.934 kb on + strand, within PS417_12435at 2704.934 kb on + strandat 2704.934 kb on + strand, within PS417_12435at 2704.935 kb on - strand, within PS417_12435at 2704.935 kb on - strand, within PS417_12435at 2705.154 kb on - strand, within PS417_12435at 2705.154 kb on - strand, within PS417_12435at 2705.154 kb on - strand, within PS417_12435at 2705.154 kb on - strand, within PS417_12435at 2705.234 kb on + strand, within PS417_12435at 2705.244 kb on - strand, within PS417_12435

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
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2,701,129 + +0.6
2,701,130 - -0.4
2,701,130 - +0.3
2,701,186 + -0.2
2,701,188 + -0.7
2,701,189 - +0.2
2,701,970 + +0.1
2,701,980 - +1.7
2,702,045 - -0.1
2,702,159 + -1.6
2,702,207 - -1.5
2,702,280 - +0.3
2,702,280 - -0.2
2,702,280 - -0.9
2,702,395 + PS417_12430 0.13 +0.6
2,702,395 + PS417_12430 0.13 -0.5
2,702,396 - PS417_12430 0.13 -0.6
2,702,507 + PS417_12430 0.18 -0.3
2,702,507 + PS417_12430 0.18 -1.0
2,702,507 + PS417_12430 0.18 -0.6
2,702,508 - +1.2
2,702,508 - -0.6
2,702,508 - PS417_12430 0.18 +0.4
2,702,508 - PS417_12430 0.18 -0.3
2,702,590 - PS417_12430 0.22 -0.9
2,702,604 - PS417_12430 0.22 -0.4
2,702,766 - PS417_12430 0.29 -0.4
2,702,813 + PS417_12430 0.32 +0.3
2,702,813 + PS417_12430 0.32 -0.1
2,702,822 + PS417_12430 0.32 +0.1
2,702,822 + PS417_12430 0.32 -0.6
2,702,832 - PS417_12430 0.32 +1.0
2,702,832 - PS417_12430 0.32 +0.5
2,702,832 - PS417_12430 0.32 -0.3
2,702,855 - PS417_12430 0.33 -0.2
2,702,855 - PS417_12430 0.33 -1.0
2,702,934 - PS417_12430 0.37 -0.0
2,703,075 + PS417_12430 0.43 +0.4
2,703,131 + PS417_12430 0.46 -0.6
2,703,230 + PS417_12430 0.50 -1.0
2,703,230 + PS417_12430 0.50 -0.7
2,703,230 + PS417_12430 0.50 -0.6
2,703,231 - -0.9
2,703,342 - PS417_12430 0.55 -0.8
2,703,344 + PS417_12430 0.55 -0.5
2,703,650 + PS417_12430 0.69 -0.4
2,703,650 + PS417_12430 0.69 -0.6
2,703,651 - PS417_12430 0.69 -0.3
2,703,651 - PS417_12430 0.69 -1.1
2,703,651 - PS417_12430 0.69 -0.5
2,703,743 + PS417_12430 0.73 -1.7
2,703,750 - PS417_12430 0.74 +0.2
2,703,750 - PS417_12430 0.74 -0.8
2,703,752 + PS417_12430 0.74 +0.6
2,703,752 + PS417_12430 0.74 +0.6
2,703,753 - PS417_12430 0.74 -0.5
2,703,753 - PS417_12430 0.74 +0.0
2,703,753 - PS417_12430 0.74 -0.5
2,703,753 - PS417_12430 0.74 +0.7
2,703,896 + PS417_12430 0.80 -0.3
2,703,936 + PS417_12430 0.82 -0.6
2,703,937 - PS417_12430 0.82 -0.3
2,704,059 + PS417_12430 0.87 -0.4
2,704,060 - PS417_12430 0.87 -1.5
2,704,324 - -0.3
2,704,468 + +0.1
2,704,468 + +0.6
2,704,469 - -0.3
2,704,469 - +1.6
2,704,730 + PS417_12435 0.16 -0.2
2,704,731 - PS417_12435 0.16 -0.8
2,704,751 + PS417_12435 0.17 +0.2
2,704,751 + PS417_12435 0.17 +0.1
2,704,838 + PS417_12435 0.22 +0.7
2,704,839 - PS417_12435 0.22 -0.9
2,704,839 - PS417_12435 0.22 +0.7
2,704,908 - PS417_12435 0.26 +0.3
2,704,926 - PS417_12435 0.27 -2.4
2,704,926 - PS417_12435 0.27 -0.0
2,704,934 + PS417_12435 0.28 -0.3
2,704,934 + +0.8
2,704,934 + PS417_12435 0.28 -0.1
2,704,935 - PS417_12435 0.28 -0.5
2,704,935 - PS417_12435 0.28 -0.1
2,705,154 - PS417_12435 0.40 -0.3
2,705,154 - PS417_12435 0.40 -0.2
2,705,154 - PS417_12435 0.40 -0.6
2,705,154 - PS417_12435 0.40 +0.3
2,705,234 + PS417_12435 0.45 +0.0
2,705,244 - PS417_12435 0.45 +0.9

Or see this region's nucleotide sequence