Strain Fitness in Pseudomonas simiae WCS417 around PS417_10850

Experiment: Fraxetin 1 mM; solid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_10840 and PS417_10845 overlap by 12 nucleotidesPS417_10845 and PS417_10850 are separated by 219 nucleotidesPS417_10850 and PS417_10855 overlap by 4 nucleotidesPS417_10855 and PS417_10860 are separated by 64 nucleotides PS417_10840: PS417_10840 - amidase, at 2,317,788 to 2,318,561 _10840 PS417_10845: PS417_10845 - hypothetical protein, at 2,318,550 to 2,318,858 _10845 PS417_10850: PS417_10850 - histidine kinase, at 2,319,078 to 2,320,139 _10850 PS417_10855: PS417_10855 - chemotaxis protein CheY, at 2,320,136 to 2,320,885 _10855 PS417_10860: PS417_10860 - flagellar basal body rod protein FlgG, at 2,320,950 to 2,321,735 _10860 Position (kb) 2319 2320 2321Strain fitness (log2 ratio) -2 -1 0 1at 2318.209 kb on + strand, within PS417_10840at 2318.494 kb on + strandat 2318.989 kb on + strandat 2318.990 kb on - strandat 2318.990 kb on - strandat 2319.744 kb on - strand, within PS417_10850at 2320.039 kb on + strandat 2320.040 kb on - strandat 2320.048 kb on + strandat 2320.049 kb on - strandat 2320.132 kb on - strandat 2320.246 kb on + strand, within PS417_10855at 2320.247 kb on - strand, within PS417_10855at 2320.247 kb on - strand, within PS417_10855at 2320.468 kb on - strand, within PS417_10855at 2320.468 kb on - strand, within PS417_10855at 2320.539 kb on + strand, within PS417_10855at 2320.540 kb on - strand, within PS417_10855at 2320.885 kb on + strandat 2320.885 kb on + strandat 2320.953 kb on + strandat 2320.953 kb on + strandat 2320.953 kb on + strandat 2320.953 kb on + strandat 2321.040 kb on - strand, within PS417_10860

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress
remove
2,318,209 + PS417_10840 0.54 -0.7
2,318,494 + +0.2
2,318,989 + -0.7
2,318,990 - +0.3
2,318,990 - -0.4
2,319,744 - PS417_10850 0.63 -0.2
2,320,039 + -0.7
2,320,040 - +0.8
2,320,048 + +1.6
2,320,049 - +0.1
2,320,132 - +0.8
2,320,246 + PS417_10855 0.15 +0.3
2,320,247 - PS417_10855 0.15 +0.9
2,320,247 - PS417_10855 0.15 +0.2
2,320,468 - PS417_10855 0.44 +0.9
2,320,468 - PS417_10855 0.44 +0.3
2,320,539 + PS417_10855 0.54 -0.3
2,320,540 - PS417_10855 0.54 -0.3
2,320,885 + -0.2
2,320,885 + +0.2
2,320,953 + -0.5
2,320,953 + -0.1
2,320,953 + -0.5
2,320,953 + +0.3
2,321,040 - PS417_10860 0.11 -1.8

Or see this region's nucleotide sequence