Experiment: Fraxetin 1 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10840 and PS417_10845 overlap by 12 nucleotides PS417_10845 and PS417_10850 are separated by 219 nucleotides PS417_10850 and PS417_10855 overlap by 4 nucleotides PS417_10855 and PS417_10860 are separated by 64 nucleotides
PS417_10840: PS417_10840 - amidase, at 2,317,788 to 2,318,561
_10840
PS417_10845: PS417_10845 - hypothetical protein, at 2,318,550 to 2,318,858
_10845
PS417_10850: PS417_10850 - histidine kinase, at 2,319,078 to 2,320,139
_10850
PS417_10855: PS417_10855 - chemotaxis protein CheY, at 2,320,136 to 2,320,885
_10855
PS417_10860: PS417_10860 - flagellar basal body rod protein FlgG, at 2,320,950 to 2,321,735
_10860
Position (kb)
2319
2320
2321 Strain fitness (log2 ratio)
-2
-1
0
1 at 2318.209 kb on + strand, within PS417_10840 at 2318.494 kb on + strand at 2318.989 kb on + strand at 2318.990 kb on - strand at 2318.990 kb on - strand at 2319.744 kb on - strand, within PS417_10850 at 2320.039 kb on + strand at 2320.040 kb on - strand at 2320.048 kb on + strand at 2320.049 kb on - strand at 2320.132 kb on - strand at 2320.246 kb on + strand, within PS417_10855 at 2320.247 kb on - strand, within PS417_10855 at 2320.247 kb on - strand, within PS417_10855 at 2320.468 kb on - strand, within PS417_10855 at 2320.468 kb on - strand, within PS417_10855 at 2320.539 kb on + strand, within PS417_10855 at 2320.540 kb on - strand, within PS417_10855 at 2320.885 kb on + strand at 2320.885 kb on + strand at 2320.953 kb on + strand at 2320.953 kb on + strand at 2320.953 kb on + strand at 2320.953 kb on + strand at 2321.040 kb on - strand, within PS417_10860
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 1 mM; solid stress remove 2,318,209 + PS417_10840 0.54 -0.7 2,318,494 + +0.2 2,318,989 + -0.7 2,318,990 - +0.3 2,318,990 - -0.4 2,319,744 - PS417_10850 0.63 -0.2 2,320,039 + -0.7 2,320,040 - +0.8 2,320,048 + +1.6 2,320,049 - +0.1 2,320,132 - +0.8 2,320,246 + PS417_10855 0.15 +0.3 2,320,247 - PS417_10855 0.15 +0.9 2,320,247 - PS417_10855 0.15 +0.2 2,320,468 - PS417_10855 0.44 +0.9 2,320,468 - PS417_10855 0.44 +0.3 2,320,539 + PS417_10855 0.54 -0.3 2,320,540 - PS417_10855 0.54 -0.3 2,320,885 + -0.2 2,320,885 + +0.2 2,320,953 + -0.5 2,320,953 + -0.1 2,320,953 + -0.5 2,320,953 + +0.3 2,321,040 - PS417_10860 0.11 -1.8
Or see this region's nucleotide sequence