Experiment: Fraxetin 0.5 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17820 and PS417_17825 are separated by 206 nucleotides PS417_17825 and PS417_17830 are separated by 128 nucleotides PS417_17830 and PS417_17835 overlap by 4 nucleotides
PS417_17820: PS417_17820 - hypothetical protein, at 3,890,125 to 3,892,677
_17820
PS417_17825: PS417_17825 - AraC family transcriptional regulator, at 3,892,884 to 3,893,744
_17825
PS417_17830: PS417_17830 - 4-hydroxyphenylacetate isomerase, at 3,893,873 to 3,894,538
_17830
PS417_17835: PS417_17835 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 3,894,535 to 3,895,305
_17835
Position (kb)
3892
3893
3894 Strain fitness (log2 ratio)
-2
-1
0
1 at 3892.028 kb on + strand, within PS417_17820 at 3892.095 kb on + strand, within PS417_17820 at 3892.337 kb on - strand, within PS417_17820 at 3892.457 kb on + strand at 3892.457 kb on + strand at 3892.745 kb on - strand at 3892.809 kb on - strand at 3893.141 kb on - strand, within PS417_17825 at 3893.548 kb on + strand, within PS417_17825 at 3893.549 kb on - strand, within PS417_17825 at 3893.566 kb on + strand, within PS417_17825 at 3893.593 kb on + strand, within PS417_17825 at 3893.594 kb on - strand, within PS417_17825 at 3893.594 kb on - strand, within PS417_17825 at 3893.674 kb on + strand at 3893.674 kb on + strand at 3893.696 kb on - strand at 3893.696 kb on - strand at 3893.696 kb on - strand at 3893.707 kb on + strand at 3893.822 kb on - strand at 3893.842 kb on - strand at 3893.930 kb on + strand at 3893.930 kb on + strand at 3894.011 kb on - strand, within PS417_17830 at 3894.161 kb on + strand, within PS417_17830 at 3894.162 kb on - strand, within PS417_17830 at 3894.200 kb on + strand, within PS417_17830 at 3894.201 kb on - strand, within PS417_17830 at 3894.201 kb on - strand, within PS417_17830 at 3894.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 0.5 mM; solid stress remove 3,892,028 + PS417_17820 0.75 +0.4 3,892,095 + PS417_17820 0.77 +0.1 3,892,337 - PS417_17820 0.87 -0.7 3,892,457 + -0.1 3,892,457 + -0.3 3,892,745 - +0.3 3,892,809 - -0.9 3,893,141 - PS417_17825 0.30 -0.1 3,893,548 + PS417_17825 0.77 -1.1 3,893,549 - PS417_17825 0.77 -0.4 3,893,566 + PS417_17825 0.79 -1.1 3,893,593 + PS417_17825 0.82 -0.6 3,893,594 - PS417_17825 0.82 -1.8 3,893,594 - PS417_17825 0.82 +0.0 3,893,674 + +0.4 3,893,674 + -0.3 3,893,696 - -0.0 3,893,696 - -0.4 3,893,696 - -0.3 3,893,707 + -0.2 3,893,822 - +0.1 3,893,842 - -0.1 3,893,930 + -0.5 3,893,930 + -0.4 3,894,011 - PS417_17830 0.21 +0.3 3,894,161 + PS417_17830 0.43 +0.6 3,894,162 - PS417_17830 0.43 -0.8 3,894,200 + PS417_17830 0.49 +0.8 3,894,201 - PS417_17830 0.49 -2.3 3,894,201 - PS417_17830 0.49 +1.5 3,894,515 - +0.2
Or see this region's nucleotide sequence