Strain Fitness in Pseudomonas simiae WCS417 around PS417_11435

Experiment: Fraxetin 0.5 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11430 and PS417_11435 are separated by 53 nucleotidesPS417_11435 and PS417_11440 are separated by 45 nucleotides PS417_11430: PS417_11430 - EamA, at 2,459,717 to 2,460,619 _11430 PS417_11435: PS417_11435 - asparagine synthase, at 2,460,673 to 2,462,577 _11435 PS417_11440: PS417_11440 - hypothetical protein, at 2,462,623 to 2,463,582 _11440 Position (kb) 2460 2461 2462 2463Strain fitness (log2 ratio) -2 -1 0 1at 2459.719 kb on - strandat 2459.722 kb on + strandat 2459.722 kb on + strandat 2459.973 kb on + strand, within PS417_11430at 2460.180 kb on - strand, within PS417_11430at 2460.387 kb on + strand, within PS417_11430at 2460.388 kb on - strand, within PS417_11430at 2460.388 kb on - strand, within PS417_11430at 2460.421 kb on + strand, within PS417_11430at 2460.441 kb on + strand, within PS417_11430at 2460.441 kb on + strand, within PS417_11430at 2460.519 kb on - strand, within PS417_11430at 2460.819 kb on + strandat 2461.215 kb on + strand, within PS417_11435at 2461.247 kb on + strand, within PS417_11435at 2461.247 kb on + strand, within PS417_11435at 2461.247 kb on + strand, within PS417_11435at 2461.427 kb on + strand, within PS417_11435at 2461.427 kb on + strand, within PS417_11435at 2461.428 kb on - strand, within PS417_11435at 2461.428 kb on - strand, within PS417_11435at 2461.428 kb on - strand, within PS417_11435at 2461.495 kb on + strand, within PS417_11435at 2461.524 kb on - strandat 2461.524 kb on - strand, within PS417_11435at 2461.538 kb on + strand, within PS417_11435at 2461.929 kb on - strand, within PS417_11435at 2462.129 kb on + strand, within PS417_11435at 2462.130 kb on - strand, within PS417_11435at 2462.253 kb on - strand, within PS417_11435at 2462.303 kb on + strand, within PS417_11435at 2462.334 kb on - strandat 2462.339 kb on + strand, within PS417_11435at 2462.339 kb on + strand, within PS417_11435at 2462.432 kb on + strandat 2462.567 kb on + strandat 2462.568 kb on - strandat 2462.568 kb on - strandat 2462.568 kb on - strandat 2462.568 kb on - strandat 2462.584 kb on + strandat 2462.584 kb on + strandat 2462.683 kb on + strandat 2462.683 kb on + strandat 2462.683 kb on + strandat 2463.020 kb on + strand, within PS417_11440at 2463.332 kb on + strand, within PS417_11440at 2463.333 kb on - strand, within PS417_11440

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 0.5 mM; solid stress
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2,459,719 - +0.8
2,459,722 + -0.1
2,459,722 + -0.6
2,459,973 + PS417_11430 0.28 -0.6
2,460,180 - PS417_11430 0.51 -0.7
2,460,387 + PS417_11430 0.74 -0.8
2,460,388 - PS417_11430 0.74 +0.3
2,460,388 - PS417_11430 0.74 -1.0
2,460,421 + PS417_11430 0.78 -0.2
2,460,441 + PS417_11430 0.80 -0.4
2,460,441 + PS417_11430 0.80 -1.1
2,460,519 - PS417_11430 0.89 -0.3
2,460,819 + -0.4
2,461,215 + PS417_11435 0.28 -0.0
2,461,247 + PS417_11435 0.30 -0.6
2,461,247 + PS417_11435 0.30 +0.5
2,461,247 + PS417_11435 0.30 -1.1
2,461,427 + PS417_11435 0.40 -0.5
2,461,427 + PS417_11435 0.40 -0.0
2,461,428 - PS417_11435 0.40 -1.2
2,461,428 - PS417_11435 0.40 -0.6
2,461,428 - PS417_11435 0.40 -0.1
2,461,495 + PS417_11435 0.43 -0.1
2,461,524 - -0.3
2,461,524 - PS417_11435 0.45 -0.1
2,461,538 + PS417_11435 0.45 -0.7
2,461,929 - PS417_11435 0.66 -0.2
2,462,129 + PS417_11435 0.76 -0.3
2,462,130 - PS417_11435 0.76 -1.8
2,462,253 - PS417_11435 0.83 +0.2
2,462,303 + PS417_11435 0.86 -0.2
2,462,334 - +0.3
2,462,339 + PS417_11435 0.87 -1.2
2,462,339 + PS417_11435 0.87 -0.1
2,462,432 + +0.2
2,462,567 + +1.2
2,462,568 - -0.7
2,462,568 - -0.0
2,462,568 - +0.1
2,462,568 - +0.7
2,462,584 + -0.0
2,462,584 + -0.4
2,462,683 + -0.8
2,462,683 + -1.1
2,462,683 + +0.5
2,463,020 + PS417_11440 0.41 +0.7
2,463,332 + PS417_11440 0.74 -0.2
2,463,333 - PS417_11440 0.74 -1.0

Or see this region's nucleotide sequence