Strain Fitness in Pseudomonas simiae WCS417 around PS417_20720

Experiment: Scopoletin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20715 and PS417_20720 are separated by 350 nucleotidesPS417_20720 and PS417_20725 overlap by 1 nucleotidesPS417_20725 and PS417_20730 are separated by 6 nucleotidesPS417_20730 and PS417_20735 overlap by 4 nucleotides PS417_20715: PS417_20715 - cytochrome Cbb3, at 4,502,461 to 4,503,408 _20715 PS417_20720: PS417_20720 - cbb3-type cytochrome c oxidase subunit I, at 4,503,759 to 4,505,201 _20720 PS417_20725: PS417_20725 - cbb3-type cytochrome c oxidase subunit II, at 4,505,201 to 4,505,809 _20725 PS417_20730: PS417_20730 - cytochrome oxidase, at 4,505,816 to 4,506,001 _20730 PS417_20735: PS417_20735 - cytochrome Cbb3, at 4,505,998 to 4,506,975 _20735 Position (kb) 4503 4504 4505 4506Strain fitness (log2 ratio) -2 -1 0 1 2at 4503.232 kb on + strand, within PS417_20715at 4503.233 kb on - strand, within PS417_20715at 4503.238 kb on + strand, within PS417_20715at 4503.239 kb on - strand, within PS417_20715at 4503.406 kb on + strandat 4503.511 kb on + strandat 4503.665 kb on + strandat 4503.708 kb on + strandat 4503.708 kb on + strandat 4503.708 kb on + strandat 4503.708 kb on + strandat 4503.786 kb on + strandat 4503.787 kb on - strandat 4503.792 kb on + strandat 4503.792 kb on + strandat 4503.800 kb on - strandat 4503.994 kb on - strand, within PS417_20720at 4503.997 kb on - strand, within PS417_20720at 4504.183 kb on - strand, within PS417_20720at 4504.233 kb on + strand, within PS417_20720at 4504.234 kb on - strand, within PS417_20720at 4504.512 kb on + strand, within PS417_20720at 4504.711 kb on - strand, within PS417_20720at 4504.848 kb on + strandat 4504.944 kb on + strand, within PS417_20720at 4504.945 kb on - strand, within PS417_20720at 4505.061 kb on + strandat 4505.118 kb on + strandat 4505.119 kb on - strandat 4505.376 kb on - strand, within PS417_20725at 4505.573 kb on + strand, within PS417_20725at 4505.983 kb on + strandat 4506.020 kb on - strandat 4506.146 kb on - strand, within PS417_20735

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; solid stress
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4,503,232 + PS417_20715 0.81 -0.9
4,503,233 - PS417_20715 0.81 -0.4
4,503,238 + PS417_20715 0.82 +1.5
4,503,239 - PS417_20715 0.82 -0.9
4,503,406 + -1.0
4,503,511 + +1.9
4,503,665 + -0.2
4,503,708 + +0.4
4,503,708 + -0.1
4,503,708 + -0.2
4,503,708 + +0.7
4,503,786 + -0.7
4,503,787 - -0.5
4,503,792 + +0.1
4,503,792 + -0.3
4,503,800 - -0.6
4,503,994 - PS417_20720 0.16 -0.6
4,503,997 - PS417_20720 0.16 -0.7
4,504,183 - PS417_20720 0.29 +0.6
4,504,233 + PS417_20720 0.33 +0.2
4,504,234 - PS417_20720 0.33 -0.8
4,504,512 + PS417_20720 0.52 -0.5
4,504,711 - PS417_20720 0.66 -1.6
4,504,848 + -0.9
4,504,944 + PS417_20720 0.82 -1.0
4,504,945 - PS417_20720 0.82 -0.5
4,505,061 + -0.2
4,505,118 + +0.5
4,505,119 - -0.4
4,505,376 - PS417_20725 0.29 -1.1
4,505,573 + PS417_20725 0.61 -1.3
4,505,983 + -2.2
4,506,020 - -0.2
4,506,146 - PS417_20735 0.15 +1.1

Or see this region's nucleotide sequence