Experiment: Scopoletin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20715 and PS417_20720 are separated by 350 nucleotides PS417_20720 and PS417_20725 overlap by 1 nucleotides PS417_20725 and PS417_20730 are separated by 6 nucleotides PS417_20730 and PS417_20735 overlap by 4 nucleotides
PS417_20715: PS417_20715 - cytochrome Cbb3, at 4,502,461 to 4,503,408
_20715
PS417_20720: PS417_20720 - cbb3-type cytochrome c oxidase subunit I, at 4,503,759 to 4,505,201
_20720
PS417_20725: PS417_20725 - cbb3-type cytochrome c oxidase subunit II, at 4,505,201 to 4,505,809
_20725
PS417_20730: PS417_20730 - cytochrome oxidase, at 4,505,816 to 4,506,001
_20730
PS417_20735: PS417_20735 - cytochrome Cbb3, at 4,505,998 to 4,506,975
_20735
Position (kb)
4503
4504
4505
4506 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4503.232 kb on + strand, within PS417_20715 at 4503.233 kb on - strand, within PS417_20715 at 4503.238 kb on + strand, within PS417_20715 at 4503.239 kb on - strand, within PS417_20715 at 4503.406 kb on + strand at 4503.511 kb on + strand at 4503.665 kb on + strand at 4503.708 kb on + strand at 4503.708 kb on + strand at 4503.708 kb on + strand at 4503.708 kb on + strand at 4503.786 kb on + strand at 4503.787 kb on - strand at 4503.792 kb on + strand at 4503.792 kb on + strand at 4503.800 kb on - strand at 4503.994 kb on - strand, within PS417_20720 at 4503.997 kb on - strand, within PS417_20720 at 4504.183 kb on - strand, within PS417_20720 at 4504.233 kb on + strand, within PS417_20720 at 4504.234 kb on - strand, within PS417_20720 at 4504.512 kb on + strand, within PS417_20720 at 4504.711 kb on - strand, within PS417_20720 at 4504.848 kb on + strand at 4504.944 kb on + strand, within PS417_20720 at 4504.945 kb on - strand, within PS417_20720 at 4505.061 kb on + strand at 4505.118 kb on + strand at 4505.119 kb on - strand at 4505.376 kb on - strand, within PS417_20725 at 4505.573 kb on + strand, within PS417_20725 at 4505.983 kb on + strand at 4506.020 kb on - strand at 4506.146 kb on - strand, within PS417_20735
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 3 mM; solid stress remove 4,503,232 + PS417_20715 0.81 -0.9 4,503,233 - PS417_20715 0.81 -0.4 4,503,238 + PS417_20715 0.82 +1.5 4,503,239 - PS417_20715 0.82 -0.9 4,503,406 + -1.0 4,503,511 + +1.9 4,503,665 + -0.2 4,503,708 + +0.4 4,503,708 + -0.1 4,503,708 + -0.2 4,503,708 + +0.7 4,503,786 + -0.7 4,503,787 - -0.5 4,503,792 + +0.1 4,503,792 + -0.3 4,503,800 - -0.6 4,503,994 - PS417_20720 0.16 -0.6 4,503,997 - PS417_20720 0.16 -0.7 4,504,183 - PS417_20720 0.29 +0.6 4,504,233 + PS417_20720 0.33 +0.2 4,504,234 - PS417_20720 0.33 -0.8 4,504,512 + PS417_20720 0.52 -0.5 4,504,711 - PS417_20720 0.66 -1.6 4,504,848 + -0.9 4,504,944 + PS417_20720 0.82 -1.0 4,504,945 - PS417_20720 0.82 -0.5 4,505,061 + -0.2 4,505,118 + +0.5 4,505,119 - -0.4 4,505,376 - PS417_20725 0.29 -1.1 4,505,573 + PS417_20725 0.61 -1.3 4,505,983 + -2.2 4,506,020 - -0.2 4,506,146 - PS417_20735 0.15 +1.1
Or see this region's nucleotide sequence