Experiment: Scopoletin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01895 and PS417_01900 are separated by 88 nucleotides PS417_01900 and PS417_01905 are separated by 149 nucleotides
PS417_01895: PS417_01895 - poly(R)-hydroxyalkanoic acid synthase, at 418,453 to 420,135
_01895
PS417_01900: PS417_01900 - poly(3-hydroxyalkanoate) depolymerase, at 420,224 to 421,069
_01900
PS417_01905: PS417_01905 - poly(R)-hydroxyalkanoic acid synthase, at 421,219 to 422,898
_01905
Position (kb) 420
421
422 Strain fitness (log2 ratio) -1
0
1
2 at 419.327 kb on + strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.328 kb on - strand, within PS417_01895 at 419.356 kb on + strand at 419.356 kb on + strand, within PS417_01895 at 419.448 kb on + strand, within PS417_01895 at 419.448 kb on + strand, within PS417_01895 at 419.448 kb on + strand, within PS417_01895 at 419.450 kb on + strand, within PS417_01895 at 419.451 kb on - strand, within PS417_01895 at 419.451 kb on - strand, within PS417_01895 at 419.453 kb on + strand, within PS417_01895 at 419.454 kb on - strand, within PS417_01895 at 419.454 kb on - strand, within PS417_01895 at 419.454 kb on - strand, within PS417_01895 at 419.495 kb on + strand, within PS417_01895 at 419.519 kb on + strand, within PS417_01895 at 419.519 kb on + strand, within PS417_01895 at 419.520 kb on - strand, within PS417_01895 at 419.846 kb on + strand, within PS417_01895 at 419.846 kb on + strand, within PS417_01895 at 419.847 kb on - strand, within PS417_01895 at 420.188 kb on + strand at 420.225 kb on + strand at 420.259 kb on + strand at 420.260 kb on - strand at 420.499 kb on - strand, within PS417_01900 at 420.622 kb on - strand, within PS417_01900 at 420.673 kb on + strand, within PS417_01900 at 420.793 kb on - strand, within PS417_01900 at 420.802 kb on - strand, within PS417_01900 at 421.046 kb on - strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.235 kb on + strand at 421.235 kb on + strand at 421.235 kb on + strand at 421.235 kb on + strand at 421.235 kb on + strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.272 kb on + strand at 421.275 kb on + strand at 421.276 kb on - strand at 421.279 kb on + strand at 421.279 kb on + strand at 421.280 kb on - strand at 421.280 kb on - strand at 421.282 kb on + strand at 421.481 kb on - strand, within PS417_01905 at 421.481 kb on - strand, within PS417_01905 at 421.481 kb on - strand, within PS417_01905 at 421.568 kb on + strand at 421.568 kb on + strand, within PS417_01905 at 421.751 kb on + strand, within PS417_01905 at 421.755 kb on + strand, within PS417_01905 at 421.755 kb on + strand, within PS417_01905 at 421.756 kb on - strand, within PS417_01905 at 421.756 kb on - strand, within PS417_01905 at 421.767 kb on - strand, within PS417_01905 at 421.974 kb on - strand, within PS417_01905
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 3 mM; solid stress remove 419,327 + PS417_01895 0.52 -0.0 419,328 - PS417_01895 0.52 +1.0 419,328 - PS417_01895 0.52 +1.5 419,328 - PS417_01895 0.52 +0.4 419,328 - PS417_01895 0.52 +0.1 419,356 + +1.5 419,356 + PS417_01895 0.54 -0.0 419,448 + PS417_01895 0.59 -0.2 419,448 + PS417_01895 0.59 +0.3 419,448 + PS417_01895 0.59 +0.9 419,450 + PS417_01895 0.59 -0.2 419,451 - PS417_01895 0.59 -0.3 419,451 - PS417_01895 0.59 -0.3 419,453 + PS417_01895 0.59 -0.0 419,454 - PS417_01895 0.59 -0.3 419,454 - PS417_01895 0.59 +0.5 419,454 - PS417_01895 0.59 -1.3 419,495 + PS417_01895 0.62 +0.8 419,519 + PS417_01895 0.63 -0.3 419,519 + PS417_01895 0.63 +0.8 419,520 - PS417_01895 0.63 -0.3 419,846 + PS417_01895 0.83 -0.7 419,846 + PS417_01895 0.83 +0.1 419,847 - PS417_01895 0.83 -0.4 420,188 + +0.7 420,225 + -0.1 420,259 + +1.2 420,260 - +0.4 420,499 - PS417_01900 0.33 -0.2 420,622 - PS417_01900 0.47 -0.4 420,673 + PS417_01900 0.53 -1.1 420,793 - PS417_01900 0.67 -0.7 420,802 - PS417_01900 0.68 -0.9 421,046 - +0.1 421,094 + -0.5 421,094 + -0.3 421,094 + -1.0 421,094 + -0.5 421,095 - +0.1 421,095 - -0.3 421,095 - -0.1 421,095 - +2.2 421,095 - -0.3 421,095 - -0.6 421,095 - +0.3 421,235 + -0.2 421,235 + -0.5 421,235 + +0.4 421,235 + -1.6 421,235 + +1.5 421,236 - -0.8 421,236 - +0.7 421,236 - -0.1 421,236 - -0.2 421,236 - +0.1 421,236 - -0.9 421,272 + -0.2 421,275 + +0.2 421,276 - +0.5 421,279 + +0.9 421,279 + +0.5 421,280 - -0.8 421,280 - -0.5 421,282 + -0.1 421,481 - PS417_01905 0.16 +0.5 421,481 - PS417_01905 0.16 -0.2 421,481 - PS417_01905 0.16 +0.0 421,568 + +2.2 421,568 + PS417_01905 0.21 -0.4 421,751 + PS417_01905 0.32 -1.3 421,755 + PS417_01905 0.32 +0.4 421,755 + PS417_01905 0.32 +1.8 421,756 - PS417_01905 0.32 +0.1 421,756 - PS417_01905 0.32 +0.5 421,767 - PS417_01905 0.33 -0.8 421,974 - PS417_01905 0.45 -0.1
Or see this region's nucleotide sequence