Strain Fitness in Pseudomonas simiae WCS417 around PS417_16085

Experiment: Scopoletin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16080 and PS417_16085 overlap by 14 nucleotidesPS417_16085 and PS417_16090 are separated by 199 nucleotidesPS417_16090 and PS417_16095 are separated by 29 nucleotides PS417_16080: PS417_16080 - AraC family transcriptional regulator, at 3,525,376 to 3,526,413 _16080 PS417_16085: PS417_16085 - LysR family transcriptional regulator, at 3,526,400 to 3,527,281 _16085 PS417_16090: PS417_16090 - hypothetical protein, at 3,527,481 to 3,528,098 _16090 PS417_16095: PS417_16095 - amidohydrolase, at 3,528,128 to 3,529,966 _16095 Position (kb) 3526 3527 3528Strain fitness (log2 ratio) -2 -1 0 1at 3525.643 kb on + strand, within PS417_16080at 3525.779 kb on - strand, within PS417_16080at 3525.932 kb on - strand, within PS417_16080at 3526.579 kb on - strand, within PS417_16085at 3526.771 kb on - strand, within PS417_16085at 3527.085 kb on + strand, within PS417_16085at 3527.085 kb on + strand, within PS417_16085at 3527.085 kb on + strand, within PS417_16085at 3527.085 kb on + strand, within PS417_16085at 3527.086 kb on - strand, within PS417_16085at 3527.089 kb on - strand, within PS417_16085at 3527.459 kb on + strandat 3527.463 kb on + strandat 3527.478 kb on + strandat 3527.479 kb on - strandat 3527.524 kb on + strandat 3528.021 kb on + strandat 3528.022 kb on - strand, within PS417_16090at 3528.121 kb on - strandat 3528.121 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; solid stress
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3,525,643 + PS417_16080 0.26 +1.2
3,525,779 - PS417_16080 0.39 -0.4
3,525,932 - PS417_16080 0.54 -0.3
3,526,579 - PS417_16085 0.20 -1.2
3,526,771 - PS417_16085 0.42 -0.8
3,527,085 + PS417_16085 0.78 -0.3
3,527,085 + PS417_16085 0.78 -0.4
3,527,085 + PS417_16085 0.78 -0.9
3,527,085 + PS417_16085 0.78 -1.0
3,527,086 - PS417_16085 0.78 -0.1
3,527,089 - PS417_16085 0.78 -0.6
3,527,459 + -0.0
3,527,463 + -0.4
3,527,478 + -0.7
3,527,479 - -0.3
3,527,524 + +0.4
3,528,021 + -1.0
3,528,022 - PS417_16090 0.88 +0.2
3,528,121 - -0.2
3,528,121 - -2.1

Or see this region's nucleotide sequence