Strain Fitness in Pseudomonas simiae WCS417 around PS417_12815

Experiment: Scopoletin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12810 and PS417_12815 are separated by 3 nucleotidesPS417_12815 and PS417_12820 are separated by 149 nucleotides PS417_12810: PS417_12810 - diguanylate cyclase, at 2,802,496 to 2,803,662 _12810 PS417_12815: PS417_12815 - diguanylate cyclase, at 2,803,666 to 2,805,843 _12815 PS417_12820: PS417_12820 - hypothetical protein, at 2,805,993 to 2,806,844 _12820 Position (kb) 2803 2804 2805 2806Strain fitness (log2 ratio) -2 -1 0 1at 2802.702 kb on + strand, within PS417_12810at 2802.722 kb on + strand, within PS417_12810at 2802.967 kb on + strand, within PS417_12810at 2803.013 kb on + strand, within PS417_12810at 2803.247 kb on - strand, within PS417_12810at 2803.327 kb on + strand, within PS417_12810at 2803.450 kb on - strand, within PS417_12810at 2803.450 kb on - strandat 2803.450 kb on - strand, within PS417_12810at 2803.615 kb on + strandat 2804.096 kb on + strand, within PS417_12815at 2804.096 kb on + strand, within PS417_12815at 2804.096 kb on + strand, within PS417_12815at 2804.097 kb on - strand, within PS417_12815at 2804.173 kb on + strand, within PS417_12815at 2804.174 kb on - strand, within PS417_12815at 2804.648 kb on + strand, within PS417_12815at 2804.830 kb on + strand, within PS417_12815at 2804.961 kb on - strand, within PS417_12815at 2805.464 kb on + strand, within PS417_12815at 2805.480 kb on - strand, within PS417_12815at 2805.533 kb on + strand, within PS417_12815at 2805.534 kb on - strand, within PS417_12815at 2805.534 kb on - strand, within PS417_12815at 2805.534 kb on - strand, within PS417_12815at 2805.665 kb on + strandat 2805.665 kb on + strandat 2805.666 kb on - strandat 2805.666 kb on - strandat 2805.894 kb on - strandat 2805.894 kb on - strandat 2805.898 kb on - strandat 2805.898 kb on - strandat 2805.995 kb on - strandat 2806.055 kb on - strandat 2806.189 kb on + strand, within PS417_12820

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; solid stress
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2,802,702 + PS417_12810 0.18 -0.4
2,802,722 + PS417_12810 0.19 -0.4
2,802,967 + PS417_12810 0.40 +0.0
2,803,013 + PS417_12810 0.44 -1.0
2,803,247 - PS417_12810 0.64 -0.3
2,803,327 + PS417_12810 0.71 -0.4
2,803,450 - PS417_12810 0.82 +0.6
2,803,450 - -1.0
2,803,450 - PS417_12810 0.82 +0.2
2,803,615 + +0.0
2,804,096 + PS417_12815 0.20 -1.0
2,804,096 + PS417_12815 0.20 -0.8
2,804,096 + PS417_12815 0.20 +0.0
2,804,097 - PS417_12815 0.20 -1.9
2,804,173 + PS417_12815 0.23 -0.2
2,804,174 - PS417_12815 0.23 -1.7
2,804,648 + PS417_12815 0.45 -0.9
2,804,830 + PS417_12815 0.53 +0.4
2,804,961 - PS417_12815 0.59 +0.1
2,805,464 + PS417_12815 0.83 -0.1
2,805,480 - PS417_12815 0.83 -0.3
2,805,533 + PS417_12815 0.86 -0.6
2,805,534 - PS417_12815 0.86 -0.8
2,805,534 - PS417_12815 0.86 -0.5
2,805,534 - PS417_12815 0.86 -1.5
2,805,665 + +0.5
2,805,665 + +0.4
2,805,666 - -0.5
2,805,666 - -0.0
2,805,894 - -0.1
2,805,894 - +1.2
2,805,898 - -0.1
2,805,898 - -1.5
2,805,995 - -0.7
2,806,055 - -0.1
2,806,189 + PS417_12820 0.23 +0.1

Or see this region's nucleotide sequence