Strain Fitness in Pseudomonas simiae WCS417 around PS417_00825

Experiment: Scopoletin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00820 and PS417_00825 are separated by 890 nucleotidesPS417_00825 and PS417_00830 are separated by 5 nucleotides PS417_00820: PS417_00820 - hypothetical protein, at 181,253 to 181,504 _00820 PS417_00825: PS417_00825 - recombinase RecF, at 182,395 to 183,564 _00825 PS417_00830: PS417_00830 - hypothetical protein, at 183,570 to 184,313 _00830 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 181.461 kb on - strand, within PS417_00820at 181.478 kb on + strand, within PS417_00820at 181.498 kb on + strandat 181.499 kb on - strandat 181.562 kb on + strandat 181.562 kb on + strandat 181.593 kb on + strandat 181.745 kb on + strandat 181.785 kb on + strandat 181.785 kb on + strandat 181.785 kb on + strandat 181.786 kb on - strandat 181.887 kb on + strandat 181.942 kb on + strandat 181.942 kb on + strandat 181.942 kb on + strandat 181.943 kb on - strandat 181.943 kb on - strandat 181.943 kb on - strandat 182.021 kb on + strandat 182.095 kb on - strandat 182.095 kb on - strandat 182.127 kb on + strandat 182.145 kb on + strandat 182.154 kb on - strandat 182.154 kb on - strandat 182.154 kb on - strandat 182.230 kb on - strandat 182.230 kb on - strandat 182.230 kb on - strandat 182.230 kb on - strandat 182.306 kb on + strandat 182.306 kb on + strandat 182.328 kb on - strandat 182.362 kb on + strandat 182.362 kb on + strandat 182.363 kb on - strandat 182.363 kb on - strandat 182.389 kb on - strandat 182.639 kb on - strand, within PS417_00825at 182.695 kb on + strand, within PS417_00825at 182.736 kb on + strand, within PS417_00825at 183.253 kb on - strand, within PS417_00825at 183.683 kb on - strand, within PS417_00830at 183.695 kb on - strand, within PS417_00830at 183.697 kb on + strand, within PS417_00830at 183.737 kb on + strandat 184.121 kb on - strand, within PS417_00830at 184.121 kb on - strand, within PS417_00830at 184.261 kb on - strandat 184.261 kb on - strandat 184.355 kb on + strandat 184.355 kb on + strandat 184.356 kb on - strandat 184.359 kb on + strandat 184.382 kb on - strandat 184.501 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; solid stress
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181,461 - PS417_00820 0.83 -0.3
181,478 + PS417_00820 0.89 +0.8
181,498 + -0.3
181,499 - -0.8
181,562 + -0.2
181,562 + +0.2
181,593 + +0.0
181,745 + -0.7
181,785 + +0.1
181,785 + +0.1
181,785 + -0.1
181,786 - -0.3
181,887 + +0.1
181,942 + -0.5
181,942 + -0.8
181,942 + +0.1
181,943 - +0.8
181,943 - -0.2
181,943 - +1.8
182,021 + -0.7
182,095 - -0.5
182,095 - -0.3
182,127 + -0.2
182,145 + -0.5
182,154 - +1.5
182,154 - -0.2
182,154 - +0.6
182,230 - +0.0
182,230 - +1.2
182,230 - +0.2
182,230 - -0.1
182,306 + -0.6
182,306 + -0.0
182,328 - -0.7
182,362 + -0.2
182,362 + -0.0
182,363 - +0.3
182,363 - -0.2
182,389 - +0.3
182,639 - PS417_00825 0.21 +0.5
182,695 + PS417_00825 0.26 -0.9
182,736 + PS417_00825 0.29 -2.9
183,253 - PS417_00825 0.73 +0.0
183,683 - PS417_00830 0.15 +1.7
183,695 - PS417_00830 0.17 +0.2
183,697 + PS417_00830 0.17 -0.2
183,737 + +1.5
184,121 - PS417_00830 0.74 -0.3
184,121 - PS417_00830 0.74 +0.2
184,261 - +1.0
184,261 - +0.9
184,355 + -1.6
184,355 + -0.1
184,356 - -0.8
184,359 + +0.3
184,382 - -1.7
184,501 + -0.5

Or see this region's nucleotide sequence