Experiment: Scopoletin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13635 and PS417_13640 overlap by 8 nucleotides PS417_13640 and PS417_13645 are separated by 30 nucleotides PS417_13645 and PS417_13650 are separated by 22 nucleotides
PS417_13635: PS417_13635 - D-ribose transporter ATP-binding protein, at 3,000,302 to 3,001,834
_13635
PS417_13640: PS417_13640 - ribose ABC transporter permease, at 3,001,827 to 3,002,804
_13640
PS417_13645: PS417_13645 - ABC transporter, at 3,002,835 to 3,003,767
_13645
PS417_13650: PS417_13650 - LacI family transcriptional regulator, at 3,003,790 to 3,004,791
_13650
Position (kb)
3001
3002
3003 Strain fitness (log2 ratio)
-2
-1
0
1 at 3000.894 kb on - strand, within PS417_13635 at 3000.894 kb on - strand, within PS417_13635 at 3000.963 kb on - strand, within PS417_13635 at 3001.043 kb on + strand, within PS417_13635 at 3001.043 kb on + strand, within PS417_13635 at 3001.065 kb on - strand, within PS417_13635 at 3001.067 kb on - strand, within PS417_13635 at 3001.771 kb on + strand at 3002.418 kb on + strand, within PS417_13640 at 3002.545 kb on + strand, within PS417_13640 at 3002.730 kb on + strand at 3003.034 kb on - strand, within PS417_13645 at 3003.065 kb on + strand, within PS417_13645 at 3003.249 kb on + strand, within PS417_13645 at 3003.598 kb on + strand, within PS417_13645 at 3003.738 kb on - strand at 3003.742 kb on - strand at 3003.742 kb on - strand at 3003.742 kb on - strand at 3003.742 kb on - strand at 3003.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress remove 3,000,894 - PS417_13635 0.39 +0.3 3,000,894 - PS417_13635 0.39 -0.4 3,000,963 - PS417_13635 0.43 -0.4 3,001,043 + PS417_13635 0.48 -0.4 3,001,043 + PS417_13635 0.48 -0.1 3,001,065 - PS417_13635 0.50 -0.6 3,001,067 - PS417_13635 0.50 -0.1 3,001,771 + -0.1 3,002,418 + PS417_13640 0.60 -0.5 3,002,545 + PS417_13640 0.73 -1.8 3,002,730 + +0.0 3,003,034 - PS417_13645 0.21 -0.2 3,003,065 + PS417_13645 0.25 -0.4 3,003,249 + PS417_13645 0.44 +0.4 3,003,598 + PS417_13645 0.82 +0.1 3,003,738 - +0.1 3,003,742 - +1.0 3,003,742 - +0.6 3,003,742 - +0.2 3,003,742 - +1.4 3,003,759 - +0.1
Or see this region's nucleotide sequence