Strain Fitness in Pseudomonas simiae WCS417 around PS417_09690

Experiment: Scopoletin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09685 and PS417_09690 overlap by 8 nucleotidesPS417_09690 and PS417_09695 are separated by 253 nucleotides PS417_09685: PS417_09685 - glucoamylase, at 2,099,418 to 2,101,244 _09685 PS417_09690: PS417_09690 - sugar dehydrogenase, at 2,101,237 to 2,102,037 _09690 PS417_09695: PS417_09695 - hydrolase, at 2,102,291 to 2,103,013 _09695 Position (kb) 2101 2102 2103Strain fitness (log2 ratio) -1 0 1at 2100.362 kb on + strand, within PS417_09685at 2100.364 kb on + strand, within PS417_09685at 2100.364 kb on + strand, within PS417_09685at 2100.364 kb on + strandat 2100.365 kb on - strand, within PS417_09685at 2100.365 kb on - strand, within PS417_09685at 2100.365 kb on - strand, within PS417_09685at 2100.584 kb on - strand, within PS417_09685at 2100.848 kb on - strand, within PS417_09685at 2101.024 kb on + strand, within PS417_09685at 2101.308 kb on - strandat 2101.544 kb on + strand, within PS417_09690at 2101.926 kb on - strand, within PS417_09690at 2101.926 kb on - strand, within PS417_09690at 2101.926 kb on - strand, within PS417_09690at 2102.012 kb on - strandat 2102.280 kb on - strandat 2102.347 kb on - strandat 2102.360 kb on - strandat 2102.564 kb on - strand, within PS417_09695at 2102.564 kb on - strand, within PS417_09695at 2102.715 kb on + strand, within PS417_09695at 2102.994 kb on + strandat 2103.016 kb on + strandat 2103.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 1 mM; solid stress
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2,100,362 + PS417_09685 0.52 -0.5
2,100,364 + PS417_09685 0.52 -0.8
2,100,364 + PS417_09685 0.52 -0.1
2,100,364 + +0.8
2,100,365 - PS417_09685 0.52 -0.1
2,100,365 - PS417_09685 0.52 -0.5
2,100,365 - PS417_09685 0.52 +0.4
2,100,584 - PS417_09685 0.64 -0.3
2,100,848 - PS417_09685 0.78 -0.4
2,101,024 + PS417_09685 0.88 -0.2
2,101,308 - -1.6
2,101,544 + PS417_09690 0.38 -0.0
2,101,926 - PS417_09690 0.86 -0.1
2,101,926 - PS417_09690 0.86 +0.5
2,101,926 - PS417_09690 0.86 +1.0
2,102,012 - -0.3
2,102,280 - -1.2
2,102,347 - +0.6
2,102,360 - +0.1
2,102,564 - PS417_09695 0.38 +0.3
2,102,564 - PS417_09695 0.38 +0.6
2,102,715 + PS417_09695 0.59 -0.6
2,102,994 + +1.5
2,103,016 + -0.1
2,103,017 - +0.1

Or see this region's nucleotide sequence