Experiment: Scopoletin 0.5 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10440 and PS417_10445 are separated by 4 nucleotides PS417_10445 and PS417_10450 are separated by 134 nucleotides PS417_10450 and PS417_10455 are separated by 28 nucleotides
PS417_10440: PS417_10440 - MFS transporter, at 2,230,087 to 2,231,244
_10440
PS417_10445: PS417_10445 - LysR family transcriptional regulator, at 2,231,249 to 2,232,151
_10445
PS417_10450: PS417_10450 - hypothetical protein, at 2,232,286 to 2,232,537
_10450
PS417_10455: PS417_10455 - membrane protein, at 2,232,566 to 2,233,318
_10455
Position (kb)
2231
2232
2233 Strain fitness (log2 ratio)
-1
0
1
2 at 2230.268 kb on - strand, within PS417_10440 at 2230.268 kb on - strand at 2230.528 kb on - strand, within PS417_10440 at 2230.543 kb on - strand, within PS417_10440 at 2230.616 kb on - strand, within PS417_10440 at 2230.744 kb on + strand, within PS417_10440 at 2230.745 kb on - strand, within PS417_10440 at 2230.745 kb on - strand, within PS417_10440 at 2230.750 kb on + strand, within PS417_10440 at 2231.340 kb on + strand, within PS417_10445 at 2231.610 kb on + strand, within PS417_10445 at 2231.782 kb on + strand, within PS417_10445 at 2232.224 kb on + strand at 2232.224 kb on + strand at 2232.224 kb on + strand at 2232.224 kb on + strand at 2232.224 kb on + strand at 2232.224 kb on + strand at 2232.225 kb on - strand at 2232.225 kb on - strand at 2232.225 kb on - strand at 2232.225 kb on - strand at 2232.225 kb on - strand at 2232.225 kb on - strand at 2232.225 kb on - strand at 2232.429 kb on + strand, within PS417_10450 at 2232.535 kb on + strand at 2232.565 kb on + strand at 2232.565 kb on + strand at 2232.572 kb on + strand at 2232.766 kb on + strand, within PS417_10455
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 0.5 mM; solid stress remove 2,230,268 - PS417_10440 0.16 -0.4 2,230,268 - +2.4 2,230,528 - PS417_10440 0.38 -0.4 2,230,543 - PS417_10440 0.39 -0.4 2,230,616 - PS417_10440 0.46 -0.1 2,230,744 + PS417_10440 0.57 +0.4 2,230,745 - PS417_10440 0.57 +0.4 2,230,745 - PS417_10440 0.57 -0.1 2,230,750 + PS417_10440 0.57 -0.1 2,231,340 + PS417_10445 0.10 -0.2 2,231,610 + PS417_10445 0.40 -0.7 2,231,782 + PS417_10445 0.59 -1.2 2,232,224 + +0.4 2,232,224 + -1.6 2,232,224 + -0.2 2,232,224 + +0.0 2,232,224 + +1.1 2,232,224 + +0.2 2,232,225 - +0.3 2,232,225 - -0.8 2,232,225 - -0.3 2,232,225 - +0.3 2,232,225 - -0.2 2,232,225 - -0.5 2,232,225 - +0.2 2,232,429 + PS417_10450 0.57 -0.5 2,232,535 + -0.8 2,232,565 + -0.2 2,232,565 + -0.1 2,232,572 + -0.2 2,232,766 + PS417_10455 0.27 -0.3
Or see this region's nucleotide sequence