Strain Fitness in Pseudomonas simiae WCS417 around PS417_22465

Experiment: 80% Methanol 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22460 and PS417_22465 are separated by 135 nucleotidesPS417_22465 and PS417_22470 are separated by 107 nucleotidesPS417_22470 and PS417_22475 are separated by 168 nucleotides PS417_22460: PS417_22460 - hypothetical protein, at 4,863,135 to 4,863,881 _22460 PS417_22465: PS417_22465 - aspartyl-tRNA synthetase, at 4,864,017 to 4,865,792 _22465 PS417_22470: PS417_22470 - FmdB family transcriptional regulator, at 4,865,900 to 4,866,121 _22470 PS417_22475: PS417_22475 - hypothetical protein, at 4,866,290 to 4,866,622 _22475 Position (kb) 4864 4865 4866Strain fitness (log2 ratio) -2 -1 0 1 2at 4863.019 kb on + strandat 4863.019 kb on + strandat 4863.020 kb on - strandat 4863.020 kb on - strandat 4863.020 kb on - strandat 4863.020 kb on - strandat 4863.136 kb on + strandat 4863.136 kb on + strandat 4863.136 kb on + strandat 4863.137 kb on - strandat 4863.938 kb on - strandat 4864.019 kb on - strandat 4865.850 kb on - strandat 4865.850 kb on - strandat 4865.850 kb on - strandat 4865.855 kb on - strandat 4865.855 kb on - strandat 4865.855 kb on - strandat 4866.105 kb on + strandat 4866.105 kb on + strandat 4866.106 kb on - strandat 4866.106 kb on - strandat 4866.106 kb on - strandat 4866.111 kb on + strandat 4866.112 kb on - strandat 4866.112 kb on - strandat 4866.112 kb on - strandat 4866.112 kb on - strandat 4866.112 kb on - strandat 4866.112 kb on - strandat 4866.203 kb on - strandat 4866.203 kb on - strandat 4866.203 kb on - strandat 4866.205 kb on - strandat 4866.399 kb on + strand, within PS417_22475at 4866.400 kb on - strand, within PS417_22475at 4866.400 kb on - strand, within PS417_22475at 4866.455 kb on - strand, within PS417_22475at 4866.455 kb on - strand, within PS417_22475at 4866.462 kb on + strand, within PS417_22475at 4866.462 kb on + strand, within PS417_22475at 4866.462 kb on + strand, within PS417_22475at 4866.569 kb on + strand, within PS417_22475at 4866.569 kb on + strand, within PS417_22475at 4866.570 kb on - strand, within PS417_22475at 4866.575 kb on - strand, within PS417_22475at 4866.622 kb on + strandat 4866.622 kb on + strandat 4866.622 kb on + strandat 4866.622 kb on + strandat 4866.622 kb on + strandat 4866.622 kb on + strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.734 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; solid stress
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4,863,019 + -1.4
4,863,019 + +0.2
4,863,020 - +0.3
4,863,020 - -0.4
4,863,020 - -1.8
4,863,020 - +0.3
4,863,136 + -0.3
4,863,136 + +0.8
4,863,136 + -0.8
4,863,137 - +0.2
4,863,938 - -0.5
4,864,019 - -0.7
4,865,850 - +1.3
4,865,850 - +0.7
4,865,850 - +0.5
4,865,855 - +0.1
4,865,855 - +0.4
4,865,855 - -0.6
4,866,105 + +0.0
4,866,105 + -1.0
4,866,106 - -0.1
4,866,106 - +1.1
4,866,106 - -0.2
4,866,111 + -0.2
4,866,112 - -0.4
4,866,112 - -0.6
4,866,112 - +0.4
4,866,112 - -0.6
4,866,112 - -0.8
4,866,112 - -0.4
4,866,203 - -0.1
4,866,203 - -0.0
4,866,203 - -0.1
4,866,205 - +0.3
4,866,399 + PS417_22475 0.33 -0.0
4,866,400 - PS417_22475 0.33 +2.1
4,866,400 - PS417_22475 0.33 +0.4
4,866,455 - PS417_22475 0.50 +0.0
4,866,455 - PS417_22475 0.50 -0.4
4,866,462 + PS417_22475 0.52 +0.9
4,866,462 + PS417_22475 0.52 -1.2
4,866,462 + PS417_22475 0.52 -0.2
4,866,569 + PS417_22475 0.84 -0.3
4,866,569 + PS417_22475 0.84 -0.2
4,866,570 - PS417_22475 0.84 +1.2
4,866,575 - PS417_22475 0.86 +1.4
4,866,622 + -0.1
4,866,622 + +0.3
4,866,622 + -0.8
4,866,622 + +0.0
4,866,622 + -0.0
4,866,622 + +0.0
4,866,623 - -0.1
4,866,623 - +0.3
4,866,623 - -0.2
4,866,623 - -0.7
4,866,623 - -0.5
4,866,623 - -1.1
4,866,623 - -0.1
4,866,623 - -0.1
4,866,623 - -0.6
4,866,734 + -0.3

Or see this region's nucleotide sequence