Strain Fitness in Pseudomonas simiae WCS417 around PS417_13290

Experiment: Fraxetin 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13285 and PS417_13290 are separated by 162 nucleotidesPS417_13290 and PS417_13295 are separated by 127 nucleotidesPS417_13295 and PS417_13300 are separated by 108 nucleotides PS417_13285: PS417_13285 - TonB-dependent receptor, at 2,919,762 to 2,921,885 _13285 PS417_13290: PS417_13290 - AraC family transcriptional regulator, at 2,922,048 to 2,923,037 _13290 PS417_13295: PS417_13295 - TetR family transcriptional regulator, at 2,923,165 to 2,923,737 _13295 PS417_13300: PS417_13300 - short-chain dehydrogenase, at 2,923,846 to 2,924,556 _13300 Position (kb) 2922 2923 2924Strain fitness (log2 ratio) -1 0 1at 2921.350 kb on + strand, within PS417_13285at 2921.446 kb on - strand, within PS417_13285at 2921.577 kb on + strand, within PS417_13285at 2921.578 kb on - strand, within PS417_13285at 2921.578 kb on - strand, within PS417_13285at 2921.578 kb on - strand, within PS417_13285at 2922.601 kb on + strand, within PS417_13290at 2922.601 kb on + strand, within PS417_13290at 2922.602 kb on - strand, within PS417_13290at 2922.602 kb on - strand, within PS417_13290at 2923.064 kb on - strandat 2923.069 kb on + strandat 2923.070 kb on - strandat 2923.072 kb on + strandat 2923.184 kb on - strandat 2923.204 kb on + strandat 2923.285 kb on - strand, within PS417_13295at 2923.293 kb on - strand, within PS417_13295at 2923.293 kb on - strand, within PS417_13295at 2923.293 kb on - strand, within PS417_13295at 2923.348 kb on + strand, within PS417_13295at 2923.349 kb on - strand, within PS417_13295at 2923.567 kb on + strandat 2923.567 kb on + strand, within PS417_13295at 2923.613 kb on + strand, within PS417_13295at 2923.803 kb on + strandat 2923.822 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; liquid stress
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2,921,350 + PS417_13285 0.75 +0.6
2,921,446 - PS417_13285 0.79 -0.1
2,921,577 + PS417_13285 0.85 +0.1
2,921,578 - PS417_13285 0.85 -0.4
2,921,578 - PS417_13285 0.85 +0.1
2,921,578 - PS417_13285 0.85 -0.2
2,922,601 + PS417_13290 0.56 -0.1
2,922,601 + PS417_13290 0.56 +0.7
2,922,602 - PS417_13290 0.56 -0.1
2,922,602 - PS417_13290 0.56 +0.1
2,923,064 - +0.8
2,923,069 + -0.0
2,923,070 - +0.2
2,923,072 + +0.3
2,923,184 - +0.8
2,923,204 + -0.5
2,923,285 - PS417_13295 0.21 +0.5
2,923,293 - PS417_13295 0.22 +0.9
2,923,293 - PS417_13295 0.22 -0.6
2,923,293 - PS417_13295 0.22 +0.1
2,923,348 + PS417_13295 0.32 +0.1
2,923,349 - PS417_13295 0.32 +0.3
2,923,567 + +1.1
2,923,567 + PS417_13295 0.70 -0.1
2,923,613 + PS417_13295 0.78 +0.7
2,923,803 + -0.1
2,923,822 + +0.3

Or see this region's nucleotide sequence