Strain Fitness in Pseudomonas simiae WCS417 around PS417_23520

Experiment: Fraxetin 1 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23515 and PS417_23520 are separated by 283 nucleotidesPS417_23520 and PS417_23525 are separated by 54 nucleotides PS417_23515: PS417_23515 - thioredoxin reductase, at 5,087,627 to 5,088,589 _23515 PS417_23520: PS417_23520 - cysteine biosynthesis protein CysZ, at 5,088,873 to 5,089,640 _23520 PS417_23525: PS417_23525 - glycoside hydrolase, at 5,089,695 to 5,090,897 _23525 Position (kb) 5088 5089 5090Strain fitness (log2 ratio) -3 -2 -1 0 1at 5088.617 kb on - strandat 5088.689 kb on - strandat 5088.736 kb on - strandat 5088.736 kb on - strandat 5088.751 kb on - strandat 5089.003 kb on - strand, within PS417_23520at 5089.081 kb on - strand, within PS417_23520at 5089.192 kb on + strand, within PS417_23520at 5089.192 kb on + strand, within PS417_23520at 5089.192 kb on + strand, within PS417_23520at 5089.192 kb on + strand, within PS417_23520at 5089.193 kb on - strand, within PS417_23520at 5089.193 kb on - strand, within PS417_23520at 5089.639 kb on - strandat 5089.981 kb on - strand, within PS417_23525at 5089.981 kb on - strand, within PS417_23525at 5090.080 kb on - strand, within PS417_23525at 5090.080 kb on - strand, within PS417_23525at 5090.127 kb on + strand, within PS417_23525at 5090.128 kb on - strand, within PS417_23525at 5090.145 kb on - strand, within PS417_23525at 5090.300 kb on - strand, within PS417_23525at 5090.326 kb on - strand, within PS417_23525at 5090.326 kb on - strand, within PS417_23525at 5090.397 kb on + strand, within PS417_23525

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; liquid stress
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5,088,617 - +0.2
5,088,689 - -0.3
5,088,736 - -0.7
5,088,736 - +0.8
5,088,751 - -0.7
5,089,003 - PS417_23520 0.17 -0.0
5,089,081 - PS417_23520 0.27 -0.1
5,089,192 + PS417_23520 0.42 -2.8
5,089,192 + PS417_23520 0.42 +0.5
5,089,192 + PS417_23520 0.42 -1.3
5,089,192 + PS417_23520 0.42 -0.8
5,089,193 - PS417_23520 0.42 -0.1
5,089,193 - PS417_23520 0.42 -0.5
5,089,639 - -0.4
5,089,981 - PS417_23525 0.24 +0.1
5,089,981 - PS417_23525 0.24 +0.3
5,090,080 - PS417_23525 0.32 -0.4
5,090,080 - PS417_23525 0.32 +0.1
5,090,127 + PS417_23525 0.36 +0.1
5,090,128 - PS417_23525 0.36 -0.6
5,090,145 - PS417_23525 0.37 +1.1
5,090,300 - PS417_23525 0.50 -0.8
5,090,326 - PS417_23525 0.52 +0.8
5,090,326 - PS417_23525 0.52 -0.5
5,090,397 + PS417_23525 0.58 -0.1

Or see this region's nucleotide sequence