Strain Fitness in Pseudomonas simiae WCS417 around PS417_16685

Experiment: Fraxetin 1 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16680 and PS417_16685 are separated by 46 nucleotidesPS417_16685 and PS417_16690 are separated by 86 nucleotidesPS417_16690 and PS417_16695 overlap by 8 nucleotides PS417_16680: PS417_16680 - MFS transporter, at 3,641,678 to 3,642,808 _16680 PS417_16685: PS417_16685 - multidrug MFS transporter, at 3,642,855 to 3,644,219 _16685 PS417_16690: PS417_16690 - hypothetical protein, at 3,644,306 to 3,644,758 _16690 PS417_16695: PS417_16695 - hypothetical protein, at 3,644,751 to 3,645,500 _16695 Position (kb) 3642 3643 3644 3645Strain fitness (log2 ratio) -2 -1 0 1at 3641.949 kb on + strand, within PS417_16680at 3641.949 kb on + strand, within PS417_16680at 3642.600 kb on + strand, within PS417_16680at 3642.718 kb on - strandat 3642.853 kb on - strandat 3642.886 kb on - strandat 3643.326 kb on - strand, within PS417_16685at 3643.763 kb on + strand, within PS417_16685at 3643.763 kb on + strand, within PS417_16685at 3643.764 kb on - strand, within PS417_16685at 3643.790 kb on + strand, within PS417_16685at 3643.790 kb on + strand, within PS417_16685at 3643.790 kb on + strand, within PS417_16685at 3643.791 kb on - strand, within PS417_16685at 3643.791 kb on - strand, within PS417_16685at 3643.792 kb on + strand, within PS417_16685at 3643.793 kb on - strand, within PS417_16685at 3643.829 kb on + strand, within PS417_16685at 3643.830 kb on - strand, within PS417_16685at 3644.044 kb on + strand, within PS417_16685at 3644.045 kb on - strand, within PS417_16685at 3644.301 kb on + strandat 3644.477 kb on - strand, within PS417_16690at 3644.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; liquid stress
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3,641,949 + PS417_16680 0.24 +0.5
3,641,949 + PS417_16680 0.24 +1.7
3,642,600 + PS417_16680 0.82 -0.2
3,642,718 - -0.6
3,642,853 - -0.2
3,642,886 - -0.2
3,643,326 - PS417_16685 0.35 +0.1
3,643,763 + PS417_16685 0.67 +0.2
3,643,763 + PS417_16685 0.67 -0.2
3,643,764 - PS417_16685 0.67 -0.4
3,643,790 + PS417_16685 0.68 -0.7
3,643,790 + PS417_16685 0.68 -0.9
3,643,790 + PS417_16685 0.68 -1.0
3,643,791 - PS417_16685 0.69 -1.0
3,643,791 - PS417_16685 0.69 -0.4
3,643,792 + PS417_16685 0.69 -0.5
3,643,793 - PS417_16685 0.69 -0.7
3,643,829 + PS417_16685 0.71 -0.5
3,643,830 - PS417_16685 0.71 -0.2
3,644,044 + PS417_16685 0.87 -2.1
3,644,045 - PS417_16685 0.87 -1.0
3,644,301 + -0.1
3,644,477 - PS417_16690 0.38 +0.3
3,644,804 - -0.4

Or see this region's nucleotide sequence