Strain Fitness in Pseudomonas simiae WCS417 around PS417_11760

Experiment: Fraxetin 1 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11755 and PS417_11760 are separated by 49 nucleotidesPS417_11760 and PS417_11765 are separated by 309 nucleotides PS417_11755: PS417_11755 - diacetyl reductase, at 2,557,356 to 2,558,135 _11755 PS417_11760: PS417_11760 - Fis family transcriptional regulator, at 2,558,185 to 2,560,050 _11760 PS417_11765: PS417_11765 - ABC transporter substrate-binding protein, at 2,560,360 to 2,561,337 _11765 Position (kb) 2558 2559 2560 2561Strain fitness (log2 ratio) -2 -1 0 1 2at 2557.206 kb on - strandat 2557.211 kb on + strandat 2557.211 kb on + strandat 2557.211 kb on + strandat 2557.211 kb on + strandat 2557.212 kb on - strandat 2557.212 kb on - strandat 2557.212 kb on - strandat 2557.321 kb on - strandat 2557.321 kb on - strandat 2557.696 kb on + strand, within PS417_11755at 2557.916 kb on - strand, within PS417_11755at 2557.929 kb on - strand, within PS417_11755at 2557.929 kb on - strandat 2557.998 kb on + strand, within PS417_11755at 2557.999 kb on - strand, within PS417_11755at 2558.891 kb on + strand, within PS417_11760at 2559.236 kb on - strand, within PS417_11760at 2559.690 kb on - strand, within PS417_11760at 2560.051 kb on - strandat 2560.079 kb on + strandat 2560.079 kb on + strandat 2560.092 kb on - strandat 2560.307 kb on + strandat 2560.308 kb on - strandat 2560.308 kb on - strandat 2560.399 kb on + strandat 2560.400 kb on - strandat 2560.621 kb on + strand, within PS417_11765at 2560.622 kb on - strand, within PS417_11765at 2560.641 kb on - strand, within PS417_11765at 2560.892 kb on - strand, within PS417_11765

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 1 mM; liquid stress
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2,557,206 - -0.4
2,557,211 + -0.2
2,557,211 + +0.2
2,557,211 + -1.2
2,557,211 + -0.7
2,557,212 - -0.2
2,557,212 - -0.4
2,557,212 - +0.2
2,557,321 - -0.2
2,557,321 - +1.6
2,557,696 + PS417_11755 0.44 -0.3
2,557,916 - PS417_11755 0.72 -0.4
2,557,929 - PS417_11755 0.73 +0.4
2,557,929 - +2.7
2,557,998 + PS417_11755 0.82 +0.3
2,557,999 - PS417_11755 0.82 +0.1
2,558,891 + PS417_11760 0.38 -0.3
2,559,236 - PS417_11760 0.56 -1.1
2,559,690 - PS417_11760 0.81 -0.3
2,560,051 - -0.5
2,560,079 + -1.3
2,560,079 + -0.2
2,560,092 - +0.1
2,560,307 + -1.8
2,560,308 - +0.1
2,560,308 - -0.1
2,560,399 + -0.0
2,560,400 - -1.0
2,560,621 + PS417_11765 0.27 -0.9
2,560,622 - PS417_11765 0.27 -0.0
2,560,641 - PS417_11765 0.29 +0.2
2,560,892 - PS417_11765 0.54 +0.4

Or see this region's nucleotide sequence