Strain Fitness in Pseudomonas simiae WCS417 around PS417_13085

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13080 and PS417_13085 are separated by 125 nucleotidesPS417_13085 and PS417_13090 are separated by 228 nucleotides PS417_13080: PS417_13080 - LysR family transcriptional regulator, at 2,857,629 to 2,858,537 _13080 PS417_13085: PS417_13085 - FMN-dependent NADH-azoreductase, at 2,858,663 to 2,859,274 _13085 PS417_13090: PS417_13090 - dienelactone hydrolase, at 2,859,503 to 2,860,540 _13090 Position (kb) 2858 2859 2860Strain fitness (log2 ratio) -2 -1 0 1at 2857.804 kb on + strand, within PS417_13080at 2857.804 kb on + strand, within PS417_13080at 2858.512 kb on + strandat 2858.513 kb on - strandat 2858.513 kb on - strandat 2858.515 kb on + strandat 2858.516 kb on - strandat 2858.571 kb on + strandat 2858.777 kb on + strand, within PS417_13085at 2858.778 kb on - strand, within PS417_13085at 2858.948 kb on + strand, within PS417_13085at 2859.198 kb on - strand, within PS417_13085at 2859.279 kb on + strandat 2859.280 kb on - strandat 2859.326 kb on - strandat 2859.362 kb on + strandat 2859.393 kb on + strandat 2859.394 kb on - strandat 2859.394 kb on - strandat 2859.394 kb on - strandat 2859.425 kb on - strandat 2859.659 kb on + strand, within PS417_13090at 2859.823 kb on + strand, within PS417_13090at 2859.823 kb on + strand, within PS417_13090at 2859.867 kb on - strand, within PS417_13090at 2859.867 kb on - strandat 2860.254 kb on - strand, within PS417_13090

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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2,857,804 + PS417_13080 0.19 -0.5
2,857,804 + PS417_13080 0.19 +0.8
2,858,512 + -0.5
2,858,513 - -0.5
2,858,513 - +0.6
2,858,515 + -0.2
2,858,516 - -0.1
2,858,571 + -0.3
2,858,777 + PS417_13085 0.19 -0.6
2,858,778 - PS417_13085 0.19 +0.5
2,858,948 + PS417_13085 0.47 -0.7
2,859,198 - PS417_13085 0.87 -2.0
2,859,279 + -0.1
2,859,280 - +0.5
2,859,326 - -0.2
2,859,362 + -0.1
2,859,393 + +0.3
2,859,394 - -2.4
2,859,394 - +0.1
2,859,394 - +0.2
2,859,425 - -0.9
2,859,659 + PS417_13090 0.15 +0.9
2,859,823 + PS417_13090 0.31 +0.4
2,859,823 + PS417_13090 0.31 +0.9
2,859,867 - PS417_13090 0.35 -0.4
2,859,867 - +0.5
2,860,254 - PS417_13090 0.72 +0.1

Or see this region's nucleotide sequence