Strain Fitness in Pseudomonas simiae WCS417 around PS417_27975

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27970 and PS417_27975 overlap by 37 nucleotidesPS417_27975 and PS417_27980 overlap by 8 nucleotides PS417_27970: PS417_27970 - type VI secretion system protein ImpG, at 6,032,789 to 6,034,648 _27970 PS417_27975: PS417_27975 - type VI secretion protein, at 6,034,612 to 6,035,655 _27975 PS417_27980: PS417_27980 - ATPase AAA, at 6,035,648 to 6,038,326 _27980 Position (kb) 6034 6035 6036Strain fitness (log2 ratio) -2 -1 0 1 2at 6033.902 kb on + strand, within PS417_27970at 6033.903 kb on - strand, within PS417_27970at 6033.903 kb on - strand, within PS417_27970at 6033.945 kb on - strand, within PS417_27970at 6034.013 kb on + strand, within PS417_27970at 6034.013 kb on + strand, within PS417_27970at 6034.014 kb on - strand, within PS417_27970at 6034.014 kb on - strand, within PS417_27970at 6034.191 kb on + strand, within PS417_27970at 6034.191 kb on + strand, within PS417_27970at 6034.261 kb on - strand, within PS417_27970at 6034.280 kb on + strand, within PS417_27970at 6034.281 kb on - strand, within PS417_27970at 6034.340 kb on + strand, within PS417_27970at 6034.444 kb on - strand, within PS417_27970at 6034.548 kb on - strandat 6034.924 kb on + strand, within PS417_27975at 6035.221 kb on + strand, within PS417_27975at 6035.251 kb on + strand, within PS417_27975at 6035.398 kb on + strand, within PS417_27975at 6035.399 kb on - strand, within PS417_27975at 6035.595 kb on - strandat 6035.699 kb on + strandat 6035.700 kb on - strandat 6035.993 kb on + strand, within PS417_27980at 6036.105 kb on - strand, within PS417_27980at 6036.528 kb on + strand, within PS417_27980at 6036.529 kb on - strand, within PS417_27980

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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6,033,902 + PS417_27970 0.60 -0.0
6,033,903 - PS417_27970 0.60 +1.3
6,033,903 - PS417_27970 0.60 +0.6
6,033,945 - PS417_27970 0.62 -1.5
6,034,013 + PS417_27970 0.66 -0.1
6,034,013 + PS417_27970 0.66 +0.5
6,034,014 - PS417_27970 0.66 +0.2
6,034,014 - PS417_27970 0.66 +1.9
6,034,191 + PS417_27970 0.75 +1.4
6,034,191 + PS417_27970 0.75 +0.7
6,034,261 - PS417_27970 0.79 +0.5
6,034,280 + PS417_27970 0.80 -0.0
6,034,281 - PS417_27970 0.80 +0.8
6,034,340 + PS417_27970 0.83 +1.1
6,034,444 - PS417_27970 0.89 -0.2
6,034,548 - -0.7
6,034,924 + PS417_27975 0.30 -0.2
6,035,221 + PS417_27975 0.58 +0.0
6,035,251 + PS417_27975 0.61 -2.2
6,035,398 + PS417_27975 0.75 -0.9
6,035,399 - PS417_27975 0.75 -2.2
6,035,595 - +0.1
6,035,699 + +0.8
6,035,700 - -0.9
6,035,993 + PS417_27980 0.13 -0.6
6,036,105 - PS417_27980 0.17 -0.8
6,036,528 + PS417_27980 0.33 +0.1
6,036,529 - PS417_27980 0.33 +0.0

Or see this region's nucleotide sequence