Strain Fitness in Pseudomonas simiae WCS417 around PS417_27155

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27145 and PS417_27150 are separated by 109 nucleotidesPS417_27150 and PS417_27155 are separated by 28 nucleotidesPS417_27155 and PS417_27160 overlap by 4 nucleotidesPS417_27160 and PS417_27165 are separated by 9 nucleotides PS417_27145: PS417_27145 - TetR family transcriptional regulator, at 5,861,547 to 5,862,188 _27145 PS417_27150: PS417_27150 - transporter, at 5,862,298 to 5,862,513 _27150 PS417_27155: PS417_27155 - aliphatic sulfonates transport ATP-binding subunit, at 5,862,542 to 5,863,348 _27155 PS417_27160: PS417_27160 - alkanesulfonate transporter permease subunit, at 5,863,345 to 5,864,133 _27160 PS417_27165: PS417_27165 - alkanesulfonate monooxygenase, at 5,864,143 to 5,865,291 _27165 Position (kb) 5862 5863 5864Strain fitness (log2 ratio) -2 -1 0 1 2at 5861.668 kb on - strand, within PS417_27145at 5861.709 kb on + strand, within PS417_27145at 5861.835 kb on + strand, within PS417_27145at 5861.836 kb on - strand, within PS417_27145at 5861.836 kb on - strand, within PS417_27145at 5861.861 kb on + strand, within PS417_27145at 5861.861 kb on + strand, within PS417_27145at 5861.862 kb on - strand, within PS417_27145at 5861.862 kb on - strand, within PS417_27145at 5861.865 kb on + strand, within PS417_27145at 5861.865 kb on + strand, within PS417_27145at 5861.865 kb on + strand, within PS417_27145at 5861.865 kb on + strand, within PS417_27145at 5861.865 kb on + strand, within PS417_27145at 5861.866 kb on - strand, within PS417_27145at 5861.866 kb on - strand, within PS417_27145at 5861.866 kb on - strand, within PS417_27145at 5861.866 kb on - strand, within PS417_27145at 5861.866 kb on - strand, within PS417_27145at 5862.061 kb on - strand, within PS417_27145at 5862.092 kb on + strand, within PS417_27145at 5862.135 kb on + strandat 5862.135 kb on + strandat 5862.135 kb on + strandat 5862.135 kb on + strandat 5862.136 kb on - strandat 5862.136 kb on - strandat 5862.136 kb on - strandat 5862.136 kb on - strandat 5862.136 kb on - strandat 5862.147 kb on + strandat 5862.147 kb on + strandat 5862.147 kb on + strandat 5862.159 kb on + strandat 5862.160 kb on - strandat 5862.160 kb on - strandat 5862.160 kb on - strandat 5862.186 kb on + strandat 5862.187 kb on - strandat 5862.187 kb on - strandat 5862.196 kb on - strandat 5862.498 kb on + strandat 5862.499 kb on - strandat 5862.499 kb on - strandat 5862.499 kb on - strandat 5862.499 kb on - strandat 5862.504 kb on + strandat 5862.505 kb on - strandat 5862.505 kb on - strandat 5862.505 kb on - strandat 5862.508 kb on - strandat 5862.508 kb on - strandat 5862.543 kb on + strandat 5862.543 kb on + strandat 5862.544 kb on - strandat 5863.025 kb on - strand, within PS417_27155at 5863.240 kb on + strand, within PS417_27155at 5863.448 kb on + strand, within PS417_27160at 5863.448 kb on + strand, within PS417_27160at 5863.449 kb on - strand, within PS417_27160at 5863.449 kb on - strand, within PS417_27160at 5863.449 kb on - strand, within PS417_27160at 5863.658 kb on + strand, within PS417_27160at 5863.658 kb on + strand, within PS417_27160at 5863.659 kb on - strand, within PS417_27160at 5863.709 kb on + strand, within PS417_27160at 5863.710 kb on - strand, within PS417_27160at 5863.721 kb on + strand, within PS417_27160at 5864.029 kb on - strand, within PS417_27160at 5864.080 kb on + strandat 5864.080 kb on + strandat 5864.080 kb on + strandat 5864.080 kb on + strandat 5864.081 kb on - strandat 5864.081 kb on - strandat 5864.126 kb on + strandat 5864.126 kb on + strandat 5864.126 kb on + strandat 5864.127 kb on - strandat 5864.144 kb on + strandat 5864.144 kb on + strandat 5864.145 kb on - strandat 5864.207 kb on + strandat 5864.207 kb on + strandat 5864.208 kb on - strandat 5864.208 kb on - strandat 5864.310 kb on + strand, within PS417_27165at 5864.310 kb on + strand, within PS417_27165at 5864.311 kb on - strand, within PS417_27165

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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5,861,668 - PS417_27145 0.19 +1.4
5,861,709 + PS417_27145 0.25 -0.3
5,861,835 + PS417_27145 0.45 +0.4
5,861,836 - PS417_27145 0.45 -0.2
5,861,836 - PS417_27145 0.45 -0.5
5,861,861 + PS417_27145 0.49 +0.3
5,861,861 + PS417_27145 0.49 -0.2
5,861,862 - PS417_27145 0.49 +2.2
5,861,862 - PS417_27145 0.49 -0.9
5,861,865 + PS417_27145 0.50 -0.4
5,861,865 + PS417_27145 0.50 -0.9
5,861,865 + PS417_27145 0.50 -0.9
5,861,865 + PS417_27145 0.50 -0.7
5,861,865 + PS417_27145 0.50 -0.2
5,861,866 - PS417_27145 0.50 -0.2
5,861,866 - PS417_27145 0.50 -0.0
5,861,866 - PS417_27145 0.50 +0.6
5,861,866 - PS417_27145 0.50 +0.4
5,861,866 - PS417_27145 0.50 +0.5
5,862,061 - PS417_27145 0.80 -0.1
5,862,092 + PS417_27145 0.85 -0.3
5,862,135 + +0.7
5,862,135 + -0.6
5,862,135 + -0.1
5,862,135 + -0.6
5,862,136 - -0.3
5,862,136 - +0.3
5,862,136 - +0.6
5,862,136 - -0.5
5,862,136 - +0.6
5,862,147 + +0.4
5,862,147 + +1.8
5,862,147 + -0.2
5,862,159 + -0.0
5,862,160 - +0.2
5,862,160 - +1.2
5,862,160 - +0.4
5,862,186 + -1.5
5,862,187 - -0.1
5,862,187 - -0.1
5,862,196 - +0.1
5,862,498 + -0.3
5,862,499 - +0.0
5,862,499 - -0.3
5,862,499 - -0.6
5,862,499 - +0.6
5,862,504 + -0.1
5,862,505 - -0.0
5,862,505 - +0.5
5,862,505 - +0.0
5,862,508 - -0.2
5,862,508 - -0.6
5,862,543 + +0.1
5,862,543 + +0.4
5,862,544 - -0.5
5,863,025 - PS417_27155 0.60 -0.2
5,863,240 + PS417_27155 0.86 -1.0
5,863,448 + PS417_27160 0.13 +0.3
5,863,448 + PS417_27160 0.13 -0.5
5,863,449 - PS417_27160 0.13 +0.0
5,863,449 - PS417_27160 0.13 +1.6
5,863,449 - PS417_27160 0.13 -1.4
5,863,658 + PS417_27160 0.40 -0.0
5,863,658 + PS417_27160 0.40 +0.8
5,863,659 - PS417_27160 0.40 +0.3
5,863,709 + PS417_27160 0.46 +0.0
5,863,710 - PS417_27160 0.46 -1.1
5,863,721 + PS417_27160 0.48 -0.2
5,864,029 - PS417_27160 0.87 +0.9
5,864,080 + +1.3
5,864,080 + +0.1
5,864,080 + -0.0
5,864,080 + -0.0
5,864,081 - +0.7
5,864,081 - +1.2
5,864,126 + -0.6
5,864,126 + +2.3
5,864,126 + -1.8
5,864,127 - -0.5
5,864,144 + +0.9
5,864,144 + -0.2
5,864,145 - +0.7
5,864,207 + -1.3
5,864,207 + +0.6
5,864,208 - +0.2
5,864,208 - -0.2
5,864,310 + PS417_27165 0.15 -0.3
5,864,310 + PS417_27165 0.15 +1.1
5,864,311 - PS417_27165 0.15 -0.1

Or see this region's nucleotide sequence