Strain Fitness in Pseudomonas simiae WCS417 around PS417_02605

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02595 and PS417_02600 overlap by 4 nucleotidesPS417_02600 and PS417_02605 are separated by 187 nucleotidesPS417_02605 and PS417_02610 are separated by 157 nucleotides PS417_02595: PS417_02595 - NAD synthetase, at 591,743 to 592,675 _02595 PS417_02600: PS417_02600 - hypothetical protein, at 592,672 to 593,121 _02600 PS417_02605: PS417_02605 - IMP dehydrogenase, at 593,309 to 596,599 _02605 PS417_02610: PS417_02610 - hypothetical protein, at 596,757 to 599,243 _02610 Position (kb) 593 594 595 596 597Strain fitness (log2 ratio) -2 -1 0 1 2 3at 592.454 kb on - strand, within PS417_02595at 592.486 kb on - strand, within PS417_02595at 592.609 kb on + strandat 592.609 kb on + strandat 592.610 kb on - strandat 592.610 kb on - strandat 592.610 kb on - strandat 592.623 kb on + strandat 592.624 kb on - strandat 592.624 kb on - strandat 592.655 kb on + strandat 592.789 kb on + strand, within PS417_02600at 592.789 kb on + strand, within PS417_02600at 592.789 kb on + strandat 592.825 kb on + strand, within PS417_02600at 592.826 kb on - strand, within PS417_02600at 592.842 kb on - strand, within PS417_02600at 592.847 kb on + strand, within PS417_02600at 592.925 kb on - strand, within PS417_02600at 593.075 kb on + strand, within PS417_02600at 593.127 kb on + strandat 593.190 kb on + strandat 593.214 kb on + strandat 593.215 kb on - strandat 593.229 kb on + strandat 593.261 kb on + strandat 593.262 kb on - strandat 593.345 kb on + strandat 593.352 kb on - strandat 593.492 kb on + strandat 593.492 kb on + strandat 593.532 kb on + strandat 593.532 kb on + strandat 593.533 kb on - strandat 593.533 kb on - strandat 593.625 kb on - strandat 593.696 kb on + strand, within PS417_02605at 593.710 kb on - strand, within PS417_02605at 594.011 kb on + strand, within PS417_02605at 594.011 kb on + strand, within PS417_02605at 594.011 kb on + strand, within PS417_02605at 594.078 kb on + strand, within PS417_02605at 594.078 kb on + strand, within PS417_02605at 594.078 kb on + strand, within PS417_02605at 594.078 kb on + strand, within PS417_02605at 594.209 kb on + strand, within PS417_02605at 594.283 kb on - strand, within PS417_02605at 594.283 kb on - strand, within PS417_02605at 594.665 kb on + strand, within PS417_02605at 594.665 kb on + strand, within PS417_02605at 594.848 kb on + strand, within PS417_02605at 594.849 kb on - strand, within PS417_02605at 594.970 kb on + strand, within PS417_02605at 594.970 kb on + strand, within PS417_02605at 595.121 kb on + strand, within PS417_02605at 595.122 kb on - strand, within PS417_02605at 595.122 kb on - strandat 595.157 kb on + strand, within PS417_02605at 595.158 kb on - strand, within PS417_02605at 595.227 kb on - strand, within PS417_02605at 595.508 kb on + strand, within PS417_02605at 595.610 kb on + strand, within PS417_02605at 595.610 kb on + strand, within PS417_02605at 596.119 kb on - strand, within PS417_02605at 596.156 kb on + strand, within PS417_02605at 596.607 kb on + strandat 596.659 kb on + strandat 596.659 kb on + strandat 596.659 kb on + strandat 596.659 kb on + strandat 596.659 kb on + strandat 596.660 kb on - strandat 596.660 kb on - strandat 596.703 kb on + strandat 596.703 kb on + strandat 596.703 kb on + strandat 596.703 kb on + strandat 596.703 kb on + strandat 596.703 kb on + strandat 596.704 kb on - strandat 596.704 kb on - strandat 596.724 kb on - strandat 596.724 kb on - strandat 596.799 kb on + strandat 596.799 kb on + strandat 596.800 kb on - strandat 596.800 kb on - strandat 596.940 kb on + strandat 596.940 kb on + strandat 596.940 kb on + strandat 596.941 kb on - strandat 596.941 kb on - strandat 596.941 kb on - strandat 596.950 kb on - strandat 596.950 kb on - strandat 597.146 kb on + strand, within PS417_02610at 597.147 kb on - strand, within PS417_02610at 597.443 kb on + strand, within PS417_02610at 597.484 kb on - strand, within PS417_02610

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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592,454 - PS417_02595 0.76 +0.3
592,486 - PS417_02595 0.80 -1.1
592,609 + +0.1
592,609 + -1.8
592,610 - +0.8
592,610 - +0.5
592,610 - -0.0
592,623 + -0.1
592,624 - +2.6
592,624 - -0.7
592,655 + +0.5
592,789 + PS417_02600 0.26 +0.0
592,789 + PS417_02600 0.26 +0.0
592,789 + +3.3
592,825 + PS417_02600 0.34 -0.3
592,826 - PS417_02600 0.34 +0.1
592,842 - PS417_02600 0.38 -0.6
592,847 + PS417_02600 0.39 +0.4
592,925 - PS417_02600 0.56 -0.1
593,075 + PS417_02600 0.90 +0.1
593,127 + +0.2
593,190 + +0.2
593,214 + +1.1
593,215 - -0.4
593,229 + +0.0
593,261 + -0.1
593,262 - -0.2
593,345 + +0.1
593,352 - -1.1
593,492 + -0.4
593,492 + +0.2
593,532 + +0.1
593,532 + +0.2
593,533 - -0.9
593,533 - -0.5
593,625 - -0.1
593,696 + PS417_02605 0.12 +1.7
593,710 - PS417_02605 0.12 +0.2
594,011 + PS417_02605 0.21 +1.2
594,011 + PS417_02605 0.21 -0.7
594,011 + PS417_02605 0.21 +0.5
594,078 + PS417_02605 0.23 +0.3
594,078 + PS417_02605 0.23 +0.6
594,078 + PS417_02605 0.23 +0.7
594,078 + PS417_02605 0.23 +0.4
594,209 + PS417_02605 0.27 -1.5
594,283 - PS417_02605 0.30 -0.6
594,283 - PS417_02605 0.30 +0.7
594,665 + PS417_02605 0.41 +0.7
594,665 + PS417_02605 0.41 -0.4
594,848 + PS417_02605 0.47 +0.6
594,849 - PS417_02605 0.47 +0.6
594,970 + PS417_02605 0.50 +0.7
594,970 + PS417_02605 0.50 -0.8
595,121 + PS417_02605 0.55 +0.8
595,122 - PS417_02605 0.55 +0.7
595,122 - +1.2
595,157 + PS417_02605 0.56 -0.7
595,158 - PS417_02605 0.56 -0.5
595,227 - PS417_02605 0.58 +0.4
595,508 + PS417_02605 0.67 +0.5
595,610 + PS417_02605 0.70 +0.3
595,610 + PS417_02605 0.70 -0.2
596,119 - PS417_02605 0.85 -0.1
596,156 + PS417_02605 0.87 -0.1
596,607 + -0.6
596,659 + -0.2
596,659 + -0.8
596,659 + -0.4
596,659 + +1.2
596,659 + -0.2
596,660 - -1.4
596,660 - +0.0
596,703 + +0.6
596,703 + +0.6
596,703 + -0.2
596,703 + +1.2
596,703 + -0.1
596,703 + -0.7
596,704 - +0.4
596,704 - -0.3
596,724 - -1.3
596,724 - -0.9
596,799 + +0.2
596,799 + -0.1
596,800 - -0.3
596,800 - -0.3
596,940 + -0.2
596,940 + +1.0
596,940 + -0.4
596,941 - -0.1
596,941 - -0.4
596,941 - -0.7
596,950 - -0.0
596,950 - +0.4
597,146 + PS417_02610 0.16 -1.2
597,147 - PS417_02610 0.16 +0.4
597,443 + PS417_02610 0.28 +0.7
597,484 - PS417_02610 0.29 +1.1

Or see this region's nucleotide sequence