Strain Fitness in Pseudomonas simiae WCS417 around PS417_24180

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24175 and PS417_24180 overlap by 4 nucleotidesPS417_24180 and PS417_24185 are separated by 880 nucleotides PS417_24175: PS417_24175 - hypothetical protein, at 5,242,212 to 5,243,765 _24175 PS417_24180: PS417_24180 - hypothetical protein, at 5,243,762 to 5,245,837 _24180 PS417_24185: PS417_24185 - hypothetical protein, at 5,246,718 to 5,246,987 _24185 Position (kb) 5243 5244 5245 5246Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5242.816 kb on + strand, within PS417_24175at 5242.816 kb on + strandat 5242.903 kb on - strand, within PS417_24175at 5242.910 kb on + strand, within PS417_24175at 5242.910 kb on + strand, within PS417_24175at 5242.968 kb on + strand, within PS417_24175at 5242.968 kb on + strand, within PS417_24175at 5243.059 kb on + strand, within PS417_24175at 5243.096 kb on + strand, within PS417_24175at 5243.097 kb on - strand, within PS417_24175at 5243.223 kb on - strand, within PS417_24175at 5243.318 kb on + strandat 5243.318 kb on + strand, within PS417_24175at 5243.318 kb on + strand, within PS417_24175at 5243.319 kb on - strand, within PS417_24175at 5243.319 kb on - strand, within PS417_24175at 5243.319 kb on - strand, within PS417_24175at 5243.333 kb on + strand, within PS417_24175at 5243.399 kb on + strand, within PS417_24175at 5243.419 kb on + strand, within PS417_24175at 5243.419 kb on + strand, within PS417_24175at 5243.419 kb on + strand, within PS417_24175at 5243.420 kb on - strand, within PS417_24175at 5243.442 kb on - strand, within PS417_24175at 5243.527 kb on + strand, within PS417_24175at 5243.527 kb on + strand, within PS417_24175at 5243.527 kb on + strand, within PS417_24175at 5243.528 kb on - strand, within PS417_24175at 5243.627 kb on + strandat 5243.628 kb on - strandat 5243.686 kb on + strandat 5243.735 kb on + strandat 5243.736 kb on - strandat 5243.757 kb on + strandat 5243.757 kb on + strandat 5243.757 kb on + strandat 5243.830 kb on + strandat 5243.830 kb on + strandat 5243.909 kb on - strandat 5243.909 kb on - strandat 5244.014 kb on - strand, within PS417_24180at 5244.021 kb on - strand, within PS417_24180at 5244.145 kb on - strand, within PS417_24180at 5244.176 kb on - strandat 5244.234 kb on - strandat 5244.234 kb on - strand, within PS417_24180at 5244.321 kb on + strand, within PS417_24180at 5244.321 kb on + strand, within PS417_24180at 5244.322 kb on - strand, within PS417_24180at 5244.425 kb on - strand, within PS417_24180at 5244.425 kb on - strand, within PS417_24180at 5244.465 kb on + strand, within PS417_24180at 5244.465 kb on + strand, within PS417_24180at 5244.465 kb on + strand, within PS417_24180at 5244.466 kb on - strand, within PS417_24180at 5244.466 kb on - strand, within PS417_24180at 5244.466 kb on - strand, within PS417_24180at 5244.466 kb on - strandat 5244.466 kb on - strand, within PS417_24180at 5244.517 kb on - strand, within PS417_24180at 5244.562 kb on + strand, within PS417_24180at 5244.562 kb on + strand, within PS417_24180at 5244.562 kb on + strand, within PS417_24180at 5244.631 kb on + strand, within PS417_24180at 5244.631 kb on + strand, within PS417_24180at 5244.697 kb on + strand, within PS417_24180at 5244.697 kb on + strand, within PS417_24180at 5244.698 kb on - strand, within PS417_24180at 5244.703 kb on - strand, within PS417_24180at 5244.703 kb on - strand, within PS417_24180at 5244.703 kb on - strand, within PS417_24180at 5244.703 kb on - strand, within PS417_24180at 5244.703 kb on - strand, within PS417_24180at 5244.706 kb on + strand, within PS417_24180at 5244.707 kb on - strand, within PS417_24180at 5244.707 kb on - strand, within PS417_24180at 5244.709 kb on + strand, within PS417_24180at 5244.709 kb on + strand, within PS417_24180at 5244.709 kb on + strand, within PS417_24180at 5244.709 kb on + strand, within PS417_24180at 5244.709 kb on + strand, within PS417_24180at 5244.709 kb on + strandat 5244.710 kb on - strand, within PS417_24180at 5244.710 kb on - strand, within PS417_24180at 5244.710 kb on - strand, within PS417_24180at 5244.808 kb on + strand, within PS417_24180at 5244.809 kb on - strand, within PS417_24180at 5244.836 kb on + strand, within PS417_24180at 5244.836 kb on + strand, within PS417_24180at 5244.836 kb on + strand, within PS417_24180at 5244.836 kb on + strand, within PS417_24180at 5244.836 kb on + strand, within PS417_24180at 5244.837 kb on - strand, within PS417_24180at 5244.837 kb on - strand, within PS417_24180at 5244.837 kb on - strand, within PS417_24180at 5244.837 kb on - strand, within PS417_24180at 5244.837 kb on - strand, within PS417_24180at 5244.837 kb on - strand, within PS417_24180at 5244.837 kb on - strand, within PS417_24180at 5244.837 kb on - strand, within PS417_24180at 5244.839 kb on - strandat 5244.958 kb on + strandat 5244.958 kb on + strand, within PS417_24180at 5244.959 kb on - strand, within PS417_24180at 5244.959 kb on - strand, within PS417_24180at 5245.022 kb on - strand, within PS417_24180at 5245.051 kb on + strand, within PS417_24180at 5245.060 kb on + strand, within PS417_24180at 5245.161 kb on - strand, within PS417_24180at 5245.233 kb on - strand, within PS417_24180at 5245.233 kb on - strand, within PS417_24180at 5245.303 kb on + strand, within PS417_24180at 5245.304 kb on - strand, within PS417_24180at 5245.304 kb on - strand, within PS417_24180at 5245.309 kb on + strand, within PS417_24180at 5245.410 kb on + strand, within PS417_24180at 5245.411 kb on - strand, within PS417_24180at 5245.411 kb on - strand, within PS417_24180at 5245.411 kb on - strand, within PS417_24180at 5245.411 kb on - strand, within PS417_24180at 5245.411 kb on - strand, within PS417_24180at 5245.411 kb on - strand, within PS417_24180at 5245.418 kb on - strand, within PS417_24180at 5245.447 kb on + strand, within PS417_24180at 5245.505 kb on + strand, within PS417_24180at 5245.506 kb on - strand, within PS417_24180at 5245.551 kb on + strand, within PS417_24180at 5245.552 kb on - strand, within PS417_24180at 5245.552 kb on - strand, within PS417_24180at 5245.568 kb on + strand, within PS417_24180at 5245.568 kb on + strand, within PS417_24180at 5245.568 kb on + strand, within PS417_24180at 5245.568 kb on + strand, within PS417_24180at 5245.569 kb on - strand, within PS417_24180at 5245.569 kb on - strand, within PS417_24180at 5245.590 kb on + strand, within PS417_24180at 5245.590 kb on + strand, within PS417_24180at 5245.590 kb on + strand, within PS417_24180at 5245.591 kb on - strand, within PS417_24180at 5245.649 kb on + strandat 5245.649 kb on + strandat 5245.649 kb on + strandat 5245.649 kb on + strandat 5245.649 kb on + strandat 5245.733 kb on + strandat 5245.734 kb on - strandat 5245.763 kb on + strandat 5245.763 kb on + strandat 5245.884 kb on - strandat 5245.889 kb on - strandat 5245.932 kb on + strandat 5246.033 kb on + strandat 5246.079 kb on + strandat 5246.096 kb on + strandat 5246.149 kb on + strandat 5246.166 kb on + strandat 5246.178 kb on + strandat 5246.179 kb on - strandat 5246.179 kb on - strandat 5246.277 kb on + strandat 5246.388 kb on + strandat 5246.394 kb on + strandat 5246.416 kb on + strandat 5246.416 kb on + strandat 5246.416 kb on + strandat 5246.416 kb on + strandat 5246.416 kb on + strandat 5246.417 kb on - strandat 5246.417 kb on - strandat 5246.417 kb on - strandat 5246.417 kb on - strandat 5246.417 kb on - strandat 5246.417 kb on - strandat 5246.417 kb on - strandat 5246.417 kb on - strandat 5246.518 kb on + strandat 5246.519 kb on - strandat 5246.543 kb on + strandat 5246.583 kb on + strandat 5246.583 kb on + strandat 5246.583 kb on + strandat 5246.601 kb on + strandat 5246.601 kb on + strandat 5246.668 kb on - strandat 5246.678 kb on + strandat 5246.678 kb on + strandat 5246.678 kb on + strandat 5246.679 kb on - strandat 5246.704 kb on + strandat 5246.704 kb on + strandat 5246.705 kb on - strandat 5246.705 kb on - strandat 5246.792 kb on + strand, within PS417_24185at 5246.793 kb on - strand, within PS417_24185at 5246.793 kb on - strand, within PS417_24185at 5246.808 kb on + strand, within PS417_24185at 5246.808 kb on + strand, within PS417_24185

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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5,242,816 + PS417_24175 0.39 -0.2
5,242,816 + +3.3
5,242,903 - PS417_24175 0.44 -0.2
5,242,910 + PS417_24175 0.45 +1.7
5,242,910 + PS417_24175 0.45 +0.2
5,242,968 + PS417_24175 0.49 +2.0
5,242,968 + PS417_24175 0.49 +0.9
5,243,059 + PS417_24175 0.55 +0.0
5,243,096 + PS417_24175 0.57 -1.3
5,243,097 - PS417_24175 0.57 +0.2
5,243,223 - PS417_24175 0.65 +1.1
5,243,318 + +2.2
5,243,318 + PS417_24175 0.71 +0.6
5,243,318 + PS417_24175 0.71 +0.6
5,243,319 - PS417_24175 0.71 +1.7
5,243,319 - PS417_24175 0.71 +0.7
5,243,319 - PS417_24175 0.71 +0.2
5,243,333 + PS417_24175 0.72 +0.2
5,243,399 + PS417_24175 0.76 +0.9
5,243,419 + PS417_24175 0.78 +0.4
5,243,419 + PS417_24175 0.78 +0.5
5,243,419 + PS417_24175 0.78 +0.8
5,243,420 - PS417_24175 0.78 +0.6
5,243,442 - PS417_24175 0.79 +0.3
5,243,527 + PS417_24175 0.85 +0.6
5,243,527 + PS417_24175 0.85 +0.6
5,243,527 + PS417_24175 0.85 +0.8
5,243,528 - PS417_24175 0.85 -0.9
5,243,627 + +0.6
5,243,628 - +1.9
5,243,686 + +0.2
5,243,735 + +1.1
5,243,736 - +0.1
5,243,757 + +0.3
5,243,757 + +1.0
5,243,757 + +1.4
5,243,830 + +1.1
5,243,830 + +0.2
5,243,909 - +2.9
5,243,909 - +0.4
5,244,014 - PS417_24180 0.12 +0.3
5,244,021 - PS417_24180 0.12 +0.3
5,244,145 - PS417_24180 0.18 +1.1
5,244,176 - +0.4
5,244,234 - +0.2
5,244,234 - PS417_24180 0.23 +0.3
5,244,321 + PS417_24180 0.27 +0.8
5,244,321 + PS417_24180 0.27 +1.0
5,244,322 - PS417_24180 0.27 +0.5
5,244,425 - PS417_24180 0.32 +1.0
5,244,425 - PS417_24180 0.32 +0.6
5,244,465 + PS417_24180 0.34 +0.1
5,244,465 + PS417_24180 0.34 +1.5
5,244,465 + PS417_24180 0.34 +0.5
5,244,466 - PS417_24180 0.34 +0.5
5,244,466 - PS417_24180 0.34 +0.2
5,244,466 - PS417_24180 0.34 +0.4
5,244,466 - +2.0
5,244,466 - PS417_24180 0.34 +1.1
5,244,517 - PS417_24180 0.36 +0.6
5,244,562 + PS417_24180 0.39 +0.6
5,244,562 + PS417_24180 0.39 +0.7
5,244,562 + PS417_24180 0.39 +1.5
5,244,631 + PS417_24180 0.42 +0.4
5,244,631 + PS417_24180 0.42 +0.9
5,244,697 + PS417_24180 0.45 +0.1
5,244,697 + PS417_24180 0.45 +0.8
5,244,698 - PS417_24180 0.45 +1.1
5,244,703 - PS417_24180 0.45 +1.0
5,244,703 - PS417_24180 0.45 -0.7
5,244,703 - PS417_24180 0.45 +0.1
5,244,703 - PS417_24180 0.45 +1.1
5,244,703 - PS417_24180 0.45 +0.2
5,244,706 + PS417_24180 0.45 +0.9
5,244,707 - PS417_24180 0.46 +0.5
5,244,707 - PS417_24180 0.46 -0.2
5,244,709 + PS417_24180 0.46 +0.5
5,244,709 + PS417_24180 0.46 +1.2
5,244,709 + PS417_24180 0.46 +0.7
5,244,709 + PS417_24180 0.46 +1.6
5,244,709 + PS417_24180 0.46 +0.9
5,244,709 + +2.0
5,244,710 - PS417_24180 0.46 +0.8
5,244,710 - PS417_24180 0.46 +0.8
5,244,710 - PS417_24180 0.46 +0.6
5,244,808 + PS417_24180 0.50 +0.4
5,244,809 - PS417_24180 0.50 +0.2
5,244,836 + PS417_24180 0.52 -0.1
5,244,836 + PS417_24180 0.52 +1.1
5,244,836 + PS417_24180 0.52 +0.7
5,244,836 + PS417_24180 0.52 +0.7
5,244,836 + PS417_24180 0.52 +1.1
5,244,837 - PS417_24180 0.52 +1.3
5,244,837 - PS417_24180 0.52 +0.8
5,244,837 - PS417_24180 0.52 +0.9
5,244,837 - PS417_24180 0.52 +0.9
5,244,837 - PS417_24180 0.52 +0.3
5,244,837 - PS417_24180 0.52 +0.5
5,244,837 - PS417_24180 0.52 +0.7
5,244,837 - PS417_24180 0.52 +0.0
5,244,839 - +0.1
5,244,958 + +2.4
5,244,958 + PS417_24180 0.58 +1.4
5,244,959 - PS417_24180 0.58 +0.7
5,244,959 - PS417_24180 0.58 +0.8
5,245,022 - PS417_24180 0.61 -0.3
5,245,051 + PS417_24180 0.62 +1.6
5,245,060 + PS417_24180 0.63 +0.1
5,245,161 - PS417_24180 0.67 -0.2
5,245,233 - PS417_24180 0.71 +0.4
5,245,233 - PS417_24180 0.71 -0.2
5,245,303 + PS417_24180 0.74 +0.9
5,245,304 - PS417_24180 0.74 +0.8
5,245,304 - PS417_24180 0.74 +0.9
5,245,309 + PS417_24180 0.75 +2.4
5,245,410 + PS417_24180 0.79 +0.6
5,245,411 - PS417_24180 0.79 +1.0
5,245,411 - PS417_24180 0.79 +0.5
5,245,411 - PS417_24180 0.79 +0.1
5,245,411 - PS417_24180 0.79 +0.3
5,245,411 - PS417_24180 0.79 +1.5
5,245,411 - PS417_24180 0.79 +1.2
5,245,418 - PS417_24180 0.80 -0.5
5,245,447 + PS417_24180 0.81 +0.9
5,245,505 + PS417_24180 0.84 +0.7
5,245,506 - PS417_24180 0.84 +1.6
5,245,551 + PS417_24180 0.86 +1.2
5,245,552 - PS417_24180 0.86 -0.2
5,245,552 - PS417_24180 0.86 +0.5
5,245,568 + PS417_24180 0.87 +0.5
5,245,568 + PS417_24180 0.87 +0.5
5,245,568 + PS417_24180 0.87 +0.9
5,245,568 + PS417_24180 0.87 +0.2
5,245,569 - PS417_24180 0.87 +0.4
5,245,569 - PS417_24180 0.87 +0.7
5,245,590 + PS417_24180 0.88 +0.4
5,245,590 + PS417_24180 0.88 +2.8
5,245,590 + PS417_24180 0.88 +2.1
5,245,591 - PS417_24180 0.88 +0.9
5,245,649 + +0.5
5,245,649 + +0.7
5,245,649 + +0.7
5,245,649 + -0.5
5,245,649 + +1.0
5,245,733 + -0.5
5,245,734 - +0.1
5,245,763 + +1.0
5,245,763 + +0.6
5,245,884 - -1.5
5,245,889 - -2.0
5,245,932 + +1.6
5,246,033 + +0.7
5,246,079 + +2.0
5,246,096 + +0.4
5,246,149 + +0.4
5,246,166 + +1.1
5,246,178 + -0.5
5,246,179 - -1.4
5,246,179 - -0.5
5,246,277 + +0.8
5,246,388 + +0.6
5,246,394 + +0.6
5,246,416 + +0.6
5,246,416 + +0.8
5,246,416 + +0.8
5,246,416 + +0.5
5,246,416 + +2.4
5,246,417 - -0.5
5,246,417 - +0.8
5,246,417 - +1.0
5,246,417 - +0.1
5,246,417 - -0.6
5,246,417 - -0.9
5,246,417 - -0.6
5,246,417 - +0.4
5,246,518 + -0.6
5,246,519 - -0.9
5,246,543 + -0.1
5,246,583 + +0.4
5,246,583 + +0.6
5,246,583 + +0.1
5,246,601 + +1.0
5,246,601 + +0.3
5,246,668 - -1.1
5,246,678 + +0.1
5,246,678 + +2.0
5,246,678 + +1.8
5,246,679 - +0.4
5,246,704 + +0.8
5,246,704 + +1.1
5,246,705 - +0.6
5,246,705 - -0.6
5,246,792 + PS417_24185 0.27 +0.4
5,246,793 - PS417_24185 0.28 +0.6
5,246,793 - PS417_24185 0.28 -0.1
5,246,808 + PS417_24185 0.33 +0.4
5,246,808 + PS417_24185 0.33 +0.5

Or see this region's nucleotide sequence