Strain Fitness in Pseudomonas simiae WCS417 around PS417_23950

Experiment: 80% Methanol 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23945 and PS417_23950 are separated by 295 nucleotidesPS417_23950 and PS417_23955 are separated by 195 nucleotidesPS417_23955 and PS417_23960 are separated by 115 nucleotides PS417_23945: PS417_23945 - ornithine aminotransferase, at 5,185,381 to 5,186,001 _23945 PS417_23950: PS417_23950 - polynucleotide phosphorylase/polyadenylase, at 5,186,297 to 5,188,402 _23950 PS417_23955: PS417_23955 - 30S ribosomal protein S15, at 5,188,598 to 5,188,867 _23955 PS417_23960: PS417_23960 - pseudouridine synthase, at 5,188,983 to 5,189,900 _23960 Position (kb) 5186 5187 5188 5189Strain fitness (log2 ratio) -1 0 1 2at 5185.334 kb on + strandat 5185.334 kb on + strandat 5185.334 kb on + strandat 5185.334 kb on + strandat 5185.334 kb on + strandat 5185.334 kb on + strandat 5185.334 kb on + strandat 5185.335 kb on - strandat 5185.345 kb on - strandat 5185.498 kb on + strand, within PS417_23945at 5185.499 kb on - strand, within PS417_23945at 5185.524 kb on + strand, within PS417_23945at 5185.693 kb on + strand, within PS417_23945at 5185.693 kb on + strand, within PS417_23945at 5185.693 kb on + strand, within PS417_23945at 5185.721 kb on - strand, within PS417_23945at 5185.750 kb on - strand, within PS417_23945at 5185.750 kb on - strand, within PS417_23945at 5185.753 kb on + strand, within PS417_23945at 5185.753 kb on + strand, within PS417_23945at 5185.753 kb on + strand, within PS417_23945at 5185.753 kb on + strandat 5185.753 kb on + strand, within PS417_23945at 5185.754 kb on - strand, within PS417_23945at 5185.754 kb on - strand, within PS417_23945at 5185.754 kb on - strand, within PS417_23945at 5185.754 kb on - strand, within PS417_23945at 5185.872 kb on + strand, within PS417_23945at 5185.890 kb on + strand, within PS417_23945at 5185.981 kb on - strandat 5186.001 kb on + strandat 5186.001 kb on + strandat 5186.002 kb on - strandat 5186.008 kb on - strandat 5186.008 kb on - strandat 5186.008 kb on - strandat 5186.325 kb on - strandat 5186.526 kb on + strand, within PS417_23950at 5186.526 kb on + strand, within PS417_23950at 5186.527 kb on - strand, within PS417_23950at 5188.439 kb on - strandat 5188.439 kb on - strandat 5188.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 3 mM; liquid stress
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5,185,334 + -0.7
5,185,334 + -0.1
5,185,334 + -0.5
5,185,334 + -0.1
5,185,334 + -0.1
5,185,334 + +1.6
5,185,334 + -0.2
5,185,335 - -0.2
5,185,345 - -0.5
5,185,498 + PS417_23945 0.19 -0.6
5,185,499 - PS417_23945 0.19 -1.5
5,185,524 + PS417_23945 0.23 +0.1
5,185,693 + PS417_23945 0.50 +0.0
5,185,693 + PS417_23945 0.50 +1.0
5,185,693 + PS417_23945 0.50 +2.1
5,185,721 - PS417_23945 0.55 -0.1
5,185,750 - PS417_23945 0.59 +0.1
5,185,750 - PS417_23945 0.59 +0.2
5,185,753 + PS417_23945 0.60 +0.0
5,185,753 + PS417_23945 0.60 -0.1
5,185,753 + PS417_23945 0.60 -0.4
5,185,753 + +0.6
5,185,753 + PS417_23945 0.60 -0.5
5,185,754 - PS417_23945 0.60 +0.7
5,185,754 - PS417_23945 0.60 -0.6
5,185,754 - PS417_23945 0.60 +0.1
5,185,754 - PS417_23945 0.60 +0.1
5,185,872 + PS417_23945 0.79 -0.6
5,185,890 + PS417_23945 0.82 -0.3
5,185,981 - +0.4
5,186,001 + -0.1
5,186,001 + +0.0
5,186,002 - -0.1
5,186,008 - -0.4
5,186,008 - -0.0
5,186,008 - -0.8
5,186,325 - +0.5
5,186,526 + PS417_23950 0.11 -1.0
5,186,526 + PS417_23950 0.11 -1.5
5,186,527 - PS417_23950 0.11 +1.2
5,188,439 - +0.6
5,188,439 - +0.1
5,188,496 - +1.0

Or see this region's nucleotide sequence